SILENT_MODE
BLOCK_FILE jp_5y7couq.concise.blc
MAX_NSEQ 356
MAX_INPUT_LEN 358
OUTPUT_FILE jp_5y7couq.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 53 345   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 346 53 355 H SPACE
SUB_CHARS 1 346 53 355 E SPACE
SUB_CHARS 1 346 53 355 - SPACE
STRAND 3 349 8
COLOUR_TEXT_REGION 3 349 8 349 51
STRAND 24 349 29
COLOUR_TEXT_REGION 24 349 29 349 51
STRAND 34 349 40
COLOUR_TEXT_REGION 34 349 40 349 51
STRAND 44 349 47
COLOUR_TEXT_REGION 44 349 47 349 51
HELIX 48 349 51
COLOUR_TEXT_REGION 48 349 51 349 50
STRAND 3 354 8
COLOUR_TEXT_REGION 3 354 8 354 51
STRAND 22 354 29
COLOUR_TEXT_REGION 22 354 29 354 51
STRAND 33 354 40
COLOUR_TEXT_REGION 33 354 40 354 51
STRAND 44 354 47
COLOUR_TEXT_REGION 44 354 47 354 51
HELIX 48 354 51
COLOUR_TEXT_REGION 48 354 51 354 50
STRAND 3 355 8
COLOUR_TEXT_REGION 3 355 8 355 51
STRAND 24 355 29
COLOUR_TEXT_REGION 24 355 29 355 51
STRAND 34 355 40
COLOUR_TEXT_REGION 34 355 40 355 51
STRAND 44 355 46
COLOUR_TEXT_REGION 44 355 46 355 51
HELIX 47 355 51
COLOUR_TEXT_REGION 47 355 51 355 50