SILENT_MODE BLOCK_FILE jp_MwwaswW.concise.blc MAX_NSEQ 305 MAX_INPUT_LEN 307 OUTPUT_FILE jp_MwwaswW.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 556 294 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 295 556 304 H SPACE SUB_CHARS 1 295 556 304 E SPACE SUB_CHARS 1 295 556 304 - SPACE STRAND 10 298 14 COLOUR_TEXT_REGION 10 298 14 298 51 STRAND 22 298 23 COLOUR_TEXT_REGION 22 298 23 298 51 STRAND 48 298 51 COLOUR_TEXT_REGION 48 298 51 298 51 STRAND 62 298 66 COLOUR_TEXT_REGION 62 298 66 298 51 STRAND 74 298 77 COLOUR_TEXT_REGION 74 298 77 298 51 STRAND 85 298 86 COLOUR_TEXT_REGION 85 298 86 298 51 STRAND 106 298 111 COLOUR_TEXT_REGION 106 298 111 298 51 STRAND 118 298 122 COLOUR_TEXT_REGION 118 298 122 298 51 STRAND 130 298 133 COLOUR_TEXT_REGION 130 298 133 298 51 STRAND 145 298 149 COLOUR_TEXT_REGION 145 298 149 298 51 STRAND 178 298 185 COLOUR_TEXT_REGION 178 298 185 298 51 STRAND 189 298 191 COLOUR_TEXT_REGION 189 298 191 298 51 STRAND 229 298 236 COLOUR_TEXT_REGION 229 298 236 298 51 STRAND 327 298 332 COLOUR_TEXT_REGION 327 298 332 298 51 STRAND 338 298 344 COLOUR_TEXT_REGION 338 298 344 298 51 STRAND 350 298 356 COLOUR_TEXT_REGION 350 298 356 298 51 STRAND 384 298 388 COLOUR_TEXT_REGION 384 298 388 298 51 STRAND 441 298 443 COLOUR_TEXT_REGION 441 298 443 298 51 STRAND 456 298 461 COLOUR_TEXT_REGION 456 298 461 298 51 STRAND 466 298 469 COLOUR_TEXT_REGION 466 298 469 298 51 STRAND 494 298 499 COLOUR_TEXT_REGION 494 298 499 298 51 STRAND 534 298 539 COLOUR_TEXT_REGION 534 298 539 298 51 HELIX 30 298 45 COLOUR_TEXT_REGION 30 298 45 298 50 HELIX 98 298 98 COLOUR_TEXT_REGION 98 298 98 298 50 HELIX 158 298 170 COLOUR_TEXT_REGION 158 298 170 298 50 HELIX 197 298 213 COLOUR_TEXT_REGION 197 298 213 298 50 HELIX 257 298 273 COLOUR_TEXT_REGION 257 298 273 298 50 HELIX 277 298 288 COLOUR_TEXT_REGION 277 298 288 298 50 HELIX 299 298 313 COLOUR_TEXT_REGION 299 298 313 298 50 HELIX 363 298 383 COLOUR_TEXT_REGION 363 298 383 298 50 HELIX 397 298 404 COLOUR_TEXT_REGION 397 298 404 298 50 HELIX 426 298 427 COLOUR_TEXT_REGION 426 298 427 298 50 HELIX 474 298 489 COLOUR_TEXT_REGION 474 298 489 298 50 HELIX 501 298 510 COLOUR_TEXT_REGION 501 298 510 298 50 HELIX 516 298 529 COLOUR_TEXT_REGION 516 298 529 298 50 HELIX 547 298 554 COLOUR_TEXT_REGION 547 298 554 298 50 STRAND 9 303 14 COLOUR_TEXT_REGION 9 303 14 303 51 STRAND 22 303 23 COLOUR_TEXT_REGION 22 303 23 303 51 STRAND 49 303 51 COLOUR_TEXT_REGION 49 303 51 303 51 STRAND 61 303 66 COLOUR_TEXT_REGION 61 303 66 303 51 STRAND 73 303 77 COLOUR_TEXT_REGION 73 303 77 303 51 STRAND 85 303 86 COLOUR_TEXT_REGION 85 303 86 303 51 STRAND 106 303 111 COLOUR_TEXT_REGION 106 303 111 303 51 STRAND 118 303 122 COLOUR_TEXT_REGION 118 303 122 303 51 STRAND 130 303 134 COLOUR_TEXT_REGION 130 303 134 303 51 STRAND 145 303 150 COLOUR_TEXT_REGION 145 303 150 303 51 STRAND 178 303 186 COLOUR_TEXT_REGION 178 303 186 303 51 STRAND 189 303 191 COLOUR_TEXT_REGION 189 303 191 303 51 STRAND 222 303 226 COLOUR_TEXT_REGION 222 303 226 303 51 STRAND 228 303 236 COLOUR_TEXT_REGION 228 303 236 303 51 STRAND 295 303 296 COLOUR_TEXT_REGION 295 303 296 303 51 STRAND 327 303 332 COLOUR_TEXT_REGION 327 303 332 303 51 STRAND 337 303 344 COLOUR_TEXT_REGION 337 303 344 303 51 STRAND 350 303 356 COLOUR_TEXT_REGION 350 303 356 303 51 STRAND 383 303 390 COLOUR_TEXT_REGION 383 303 390 303 51 STRAND 441 303 444 COLOUR_TEXT_REGION 441 303 444 303 51 STRAND 455 303 461 COLOUR_TEXT_REGION 455 303 461 303 51 STRAND 466 303 470 COLOUR_TEXT_REGION 466 303 470 303 51 STRAND 494 303 499 COLOUR_TEXT_REGION 494 303 499 303 51 STRAND 535 303 539 COLOUR_TEXT_REGION 535 303 539 303 51 HELIX 30 303 45 COLOUR_TEXT_REGION 30 303 45 303 50 HELIX 95 303 101 COLOUR_TEXT_REGION 95 303 101 303 50 HELIX 112 303 114 COLOUR_TEXT_REGION 112 303 114 303 50 HELIX 158 303 170 COLOUR_TEXT_REGION 158 303 170 303 50 HELIX 196 303 212 COLOUR_TEXT_REGION 196 303 212 303 50 HELIX 259 303 273 COLOUR_TEXT_REGION 259 303 273 303 50 HELIX 277 303 284 COLOUR_TEXT_REGION 277 303 284 303 50 HELIX 299 303 313 COLOUR_TEXT_REGION 299 303 313 303 50 HELIX 363 303 382 COLOUR_TEXT_REGION 363 303 382 303 50 HELIX 397 303 405 COLOUR_TEXT_REGION 397 303 405 303 50 HELIX 407 303 408 COLOUR_TEXT_REGION 407 303 408 303 50 HELIX 476 303 490 COLOUR_TEXT_REGION 476 303 490 303 50 HELIX 501 303 510 COLOUR_TEXT_REGION 501 303 510 303 50 HELIX 516 303 529 COLOUR_TEXT_REGION 516 303 529 303 50 HELIX 547 303 554 COLOUR_TEXT_REGION 547 303 554 303 50 STRAND 12 304 15 COLOUR_TEXT_REGION 12 304 15 304 51 STRAND 22 304 24 COLOUR_TEXT_REGION 22 304 24 304 51 STRAND 26 304 26 COLOUR_TEXT_REGION 26 304 26 304 51 STRAND 47 304 51 COLOUR_TEXT_REGION 47 304 51 304 51 STRAND 62 304 67 COLOUR_TEXT_REGION 62 304 67 304 51 STRAND 75 304 76 COLOUR_TEXT_REGION 75 304 76 304 51 STRAND 85 304 85 COLOUR_TEXT_REGION 85 304 85 304 51 STRAND 107 304 111 COLOUR_TEXT_REGION 107 304 111 304 51 STRAND 118 304 121 COLOUR_TEXT_REGION 118 304 121 304 51 STRAND 130 304 132 COLOUR_TEXT_REGION 130 304 132 304 51 STRAND 145 304 148 COLOUR_TEXT_REGION 145 304 148 304 51 STRAND 179 304 183 COLOUR_TEXT_REGION 179 304 183 304 51 STRAND 234 304 237 COLOUR_TEXT_REGION 234 304 237 304 51 STRAND 318 304 318 COLOUR_TEXT_REGION 318 304 318 304 51 STRAND 327 304 333 COLOUR_TEXT_REGION 327 304 333 304 51 STRAND 339 304 344 COLOUR_TEXT_REGION 339 304 344 304 51 STRAND 351 304 356 COLOUR_TEXT_REGION 351 304 356 304 51 STRAND 457 304 462 COLOUR_TEXT_REGION 457 304 462 304 51 STRAND 494 304 499 COLOUR_TEXT_REGION 494 304 499 304 51 STRAND 533 304 539 COLOUR_TEXT_REGION 533 304 539 304 51 HELIX 30 304 46 COLOUR_TEXT_REGION 30 304 46 304 50 HELIX 159 304 169 COLOUR_TEXT_REGION 159 304 169 304 50 HELIX 207 304 214 COLOUR_TEXT_REGION 207 304 214 304 50 HELIX 256 304 263 COLOUR_TEXT_REGION 256 304 263 304 50 HELIX 265 304 270 COLOUR_TEXT_REGION 265 304 270 304 50 HELIX 282 304 288 COLOUR_TEXT_REGION 282 304 288 304 50 HELIX 299 304 313 COLOUR_TEXT_REGION 299 304 313 304 50 HELIX 363 304 385 COLOUR_TEXT_REGION 363 304 385 304 50 HELIX 397 304 403 COLOUR_TEXT_REGION 397 304 403 304 50 HELIX 423 304 431 COLOUR_TEXT_REGION 423 304 431 304 50 HELIX 473 304 489 COLOUR_TEXT_REGION 473 304 489 304 50 HELIX 502 304 510 COLOUR_TEXT_REGION 502 304 510 304 50 HELIX 517 304 529 COLOUR_TEXT_REGION 517 304 529 304 50 HELIX 547 304 554 COLOUR_TEXT_REGION 547 304 554 304 50