SILENT_MODE BLOCK_FILE jp_CZn7DpN.concise.blc MAX_NSEQ 483 MAX_INPUT_LEN 485 OUTPUT_FILE jp_CZn7DpN.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 143 472 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 473 143 482 H SPACE SUB_CHARS 1 473 143 482 E SPACE SUB_CHARS 1 473 143 482 - SPACE STRAND 81 476 83 COLOUR_TEXT_REGION 81 476 83 476 51 HELIX 12 476 22 COLOUR_TEXT_REGION 12 476 22 476 50 HELIX 24 476 35 COLOUR_TEXT_REGION 24 476 35 476 50 HELIX 48 476 65 COLOUR_TEXT_REGION 48 476 65 476 50 HELIX 70 476 80 COLOUR_TEXT_REGION 70 476 80 476 50 HELIX 98 476 122 COLOUR_TEXT_REGION 98 476 122 476 50 HELIX 136 476 140 COLOUR_TEXT_REGION 136 476 140 476 50 STRAND 81 481 83 COLOUR_TEXT_REGION 81 481 83 481 51 HELIX 12 481 21 COLOUR_TEXT_REGION 12 481 21 481 50 HELIX 24 481 33 COLOUR_TEXT_REGION 24 481 33 481 50 HELIX 48 481 66 COLOUR_TEXT_REGION 48 481 66 481 50 HELIX 70 481 77 COLOUR_TEXT_REGION 70 481 77 481 50 HELIX 79 481 80 COLOUR_TEXT_REGION 79 481 80 481 50 HELIX 98 481 122 COLOUR_TEXT_REGION 98 481 122 481 50 HELIX 136 481 141 COLOUR_TEXT_REGION 136 481 141 481 50 STRAND 82 482 82 COLOUR_TEXT_REGION 82 482 82 482 51 HELIX 12 482 36 COLOUR_TEXT_REGION 12 482 36 482 50 HELIX 48 482 65 COLOUR_TEXT_REGION 48 482 65 482 50 HELIX 71 482 81 COLOUR_TEXT_REGION 71 482 81 482 50 HELIX 98 482 122 COLOUR_TEXT_REGION 98 482 122 482 50 HELIX 137 482 140 COLOUR_TEXT_REGION 137 482 140 482 50