SILENT_MODE
BLOCK_FILE jp_f5qZV0H.concise.blc
MAX_NSEQ 915
MAX_INPUT_LEN 917
OUTPUT_FILE jp_f5qZV0H.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 164 904   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 905 164 914 H SPACE
SUB_CHARS 1 905 164 914 E SPACE
SUB_CHARS 1 905 164 914 - SPACE
STRAND 3 908 7
COLOUR_TEXT_REGION 3 908 7 908 51
STRAND 25 908 32
COLOUR_TEXT_REGION 25 908 32 908 51
STRAND 47 908 55
COLOUR_TEXT_REGION 47 908 55 908 51
STRAND 90 908 94
COLOUR_TEXT_REGION 90 908 94 908 51
STRAND 121 908 126
COLOUR_TEXT_REGION 121 908 126 908 51
STRAND 150 908 154
COLOUR_TEXT_REGION 150 908 154 908 51
HELIX 13 908 18
COLOUR_TEXT_REGION 13 908 18 908 50
HELIX 61 908 72
COLOUR_TEXT_REGION 61 908 72 908 50
HELIX 98 908 114
COLOUR_TEXT_REGION 98 908 114 908 50
HELIX 134 908 144
COLOUR_TEXT_REGION 134 908 144 908 50
HELIX 155 908 161
COLOUR_TEXT_REGION 155 908 161 908 50
STRAND 3 913 7
COLOUR_TEXT_REGION 3 913 7 913 51
STRAND 25 913 32
COLOUR_TEXT_REGION 25 913 32 913 51
STRAND 47 913 55
COLOUR_TEXT_REGION 47 913 55 913 51
STRAND 91 913 95
COLOUR_TEXT_REGION 91 913 95 913 51
STRAND 121 913 127
COLOUR_TEXT_REGION 121 913 127 913 51
STRAND 150 913 154
COLOUR_TEXT_REGION 150 913 154 913 51
HELIX 14 913 18
COLOUR_TEXT_REGION 14 913 18 913 50
HELIX 62 913 71
COLOUR_TEXT_REGION 62 913 71 913 50
HELIX 98 913 114
COLOUR_TEXT_REGION 98 913 114 913 50
HELIX 134 913 144
COLOUR_TEXT_REGION 134 913 144 913 50
HELIX 155 913 162
COLOUR_TEXT_REGION 155 913 162 913 50
STRAND 3 914 6
COLOUR_TEXT_REGION 3 914 6 914 51
STRAND 25 914 28
COLOUR_TEXT_REGION 25 914 28 914 51
STRAND 48 914 55
COLOUR_TEXT_REGION 48 914 55 914 51
STRAND 90 914 93
COLOUR_TEXT_REGION 90 914 93 914 51
STRAND 122 914 126
COLOUR_TEXT_REGION 122 914 126 914 51
STRAND 150 914 154
COLOUR_TEXT_REGION 150 914 154 914 51
HELIX 12 914 19
COLOUR_TEXT_REGION 12 914 19 914 50
HELIX 59 914 72
COLOUR_TEXT_REGION 59 914 72 914 50
HELIX 98 914 114
COLOUR_TEXT_REGION 98 914 114 914 50
HELIX 135 914 144
COLOUR_TEXT_REGION 135 914 144 914 50