SILENT_MODE BLOCK_FILE jp_3YFogVN.concise.blc MAX_NSEQ 439 MAX_INPUT_LEN 441 OUTPUT_FILE jp_3YFogVN.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 291 428 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 429 291 438 H SPACE SUB_CHARS 1 429 291 438 E SPACE SUB_CHARS 1 429 291 438 - SPACE STRAND 5 432 8 COLOUR_TEXT_REGION 5 432 8 432 51 STRAND 75 432 79 COLOUR_TEXT_REGION 75 432 79 432 51 STRAND 188 432 189 COLOUR_TEXT_REGION 188 432 189 432 51 STRAND 276 432 279 COLOUR_TEXT_REGION 276 432 279 432 51 STRAND 285 432 287 COLOUR_TEXT_REGION 285 432 287 432 51 HELIX 9 432 31 COLOUR_TEXT_REGION 9 432 31 432 50 HELIX 36 432 46 COLOUR_TEXT_REGION 36 432 46 432 50 HELIX 54 432 65 COLOUR_TEXT_REGION 54 432 65 432 50 HELIX 88 432 97 COLOUR_TEXT_REGION 88 432 97 432 50 HELIX 102 432 114 COLOUR_TEXT_REGION 102 432 114 432 50 HELIX 118 432 126 COLOUR_TEXT_REGION 118 432 126 432 50 HELIX 137 432 168 COLOUR_TEXT_REGION 137 432 168 432 50 HELIX 176 432 182 COLOUR_TEXT_REGION 176 432 182 432 50 HELIX 190 432 202 COLOUR_TEXT_REGION 190 432 202 432 50 HELIX 214 432 222 COLOUR_TEXT_REGION 214 432 222 432 50 HELIX 226 432 237 COLOUR_TEXT_REGION 226 432 237 432 50 HELIX 241 432 254 COLOUR_TEXT_REGION 241 432 254 432 50 HELIX 260 432 270 COLOUR_TEXT_REGION 260 432 270 432 50 STRAND 5 437 8 COLOUR_TEXT_REGION 5 437 8 437 51 STRAND 75 437 79 COLOUR_TEXT_REGION 75 437 79 437 51 STRAND 188 437 188 COLOUR_TEXT_REGION 188 437 188 437 51 STRAND 277 437 279 COLOUR_TEXT_REGION 277 437 279 437 51 STRAND 285 437 286 COLOUR_TEXT_REGION 285 437 286 437 51 HELIX 13 437 31 COLOUR_TEXT_REGION 13 437 31 437 50 HELIX 36 437 46 COLOUR_TEXT_REGION 36 437 46 437 50 HELIX 55 437 66 COLOUR_TEXT_REGION 55 437 66 437 50 HELIX 88 437 97 COLOUR_TEXT_REGION 88 437 97 437 50 HELIX 101 437 114 COLOUR_TEXT_REGION 101 437 114 437 50 HELIX 117 437 125 COLOUR_TEXT_REGION 117 437 125 437 50 HELIX 137 437 169 COLOUR_TEXT_REGION 137 437 169 437 50 HELIX 176 437 183 COLOUR_TEXT_REGION 176 437 183 437 50 HELIX 189 437 202 COLOUR_TEXT_REGION 189 437 202 437 50 HELIX 214 437 222 COLOUR_TEXT_REGION 214 437 222 437 50 HELIX 227 437 237 COLOUR_TEXT_REGION 227 437 237 437 50 HELIX 241 437 253 COLOUR_TEXT_REGION 241 437 253 437 50 HELIX 260 437 270 COLOUR_TEXT_REGION 260 437 270 437 50 STRAND 5 438 7 COLOUR_TEXT_REGION 5 438 7 438 51 STRAND 80 438 81 COLOUR_TEXT_REGION 80 438 81 438 51 STRAND 188 438 190 COLOUR_TEXT_REGION 188 438 190 438 51 STRAND 276 438 278 COLOUR_TEXT_REGION 276 438 278 438 51 STRAND 284 438 287 COLOUR_TEXT_REGION 284 438 287 438 51 HELIX 8 438 32 COLOUR_TEXT_REGION 8 438 32 438 50 HELIX 37 438 46 COLOUR_TEXT_REGION 37 438 46 438 50 HELIX 52 438 65 COLOUR_TEXT_REGION 52 438 65 438 50 HELIX 73 438 73 COLOUR_TEXT_REGION 73 438 73 438 50 HELIX 76 438 76 COLOUR_TEXT_REGION 76 438 76 438 50 HELIX 88 438 97 COLOUR_TEXT_REGION 88 438 97 438 50 HELIX 103 438 115 COLOUR_TEXT_REGION 103 438 115 438 50 HELIX 118 438 126 COLOUR_TEXT_REGION 118 438 126 438 50 HELIX 138 438 167 COLOUR_TEXT_REGION 138 438 167 438 50 HELIX 192 438 202 COLOUR_TEXT_REGION 192 438 202 438 50 HELIX 214 438 221 COLOUR_TEXT_REGION 214 438 221 438 50 HELIX 225 438 237 COLOUR_TEXT_REGION 225 438 237 438 50 HELIX 241 438 254 COLOUR_TEXT_REGION 241 438 254 438 50 HELIX 259 438 269 COLOUR_TEXT_REGION 259 438 269 438 50