SILENT_MODE BLOCK_FILE jp_jq_E3sU.concise.blc MAX_NSEQ 867 MAX_INPUT_LEN 869 OUTPUT_FILE jp_jq_E3sU.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 318 856 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 857 318 866 H SPACE SUB_CHARS 1 857 318 866 E SPACE SUB_CHARS 1 857 318 866 - SPACE STRAND 10 860 11 COLOUR_TEXT_REGION 10 860 11 860 51 STRAND 22 860 27 COLOUR_TEXT_REGION 22 860 27 860 51 STRAND 56 860 58 COLOUR_TEXT_REGION 56 860 58 860 51 STRAND 79 860 83 COLOUR_TEXT_REGION 79 860 83 860 51 STRAND 102 860 103 COLOUR_TEXT_REGION 102 860 103 860 51 STRAND 157 860 162 COLOUR_TEXT_REGION 157 860 162 860 51 STRAND 185 860 189 COLOUR_TEXT_REGION 185 860 189 860 51 STRAND 216 860 218 COLOUR_TEXT_REGION 216 860 218 860 51 STRAND 239 860 240 COLOUR_TEXT_REGION 239 860 240 860 51 STRAND 261 860 261 COLOUR_TEXT_REGION 261 860 261 860 51 STRAND 294 860 299 COLOUR_TEXT_REGION 294 860 299 860 51 HELIX 36 860 50 COLOUR_TEXT_REGION 36 860 50 860 50 HELIX 63 860 74 COLOUR_TEXT_REGION 63 860 74 860 50 HELIX 89 860 97 COLOUR_TEXT_REGION 89 860 97 860 50 HELIX 112 860 122 COLOUR_TEXT_REGION 112 860 122 860 50 HELIX 137 860 151 COLOUR_TEXT_REGION 137 860 151 860 50 HELIX 168 860 179 COLOUR_TEXT_REGION 168 860 179 860 50 HELIX 199 860 201 COLOUR_TEXT_REGION 199 860 201 860 50 HELIX 230 860 234 COLOUR_TEXT_REGION 230 860 234 860 50 HELIX 244 860 256 COLOUR_TEXT_REGION 244 860 256 860 50 HELIX 266 860 285 COLOUR_TEXT_REGION 266 860 285 860 50 HELIX 306 860 316 COLOUR_TEXT_REGION 306 860 316 860 50 STRAND 10 865 11 COLOUR_TEXT_REGION 10 865 11 865 51 STRAND 23 865 26 COLOUR_TEXT_REGION 23 865 26 865 51 STRAND 56 865 59 COLOUR_TEXT_REGION 56 865 59 865 51 STRAND 78 865 83 COLOUR_TEXT_REGION 78 865 83 865 51 STRAND 102 865 104 COLOUR_TEXT_REGION 102 865 104 865 51 STRAND 158 865 162 COLOUR_TEXT_REGION 158 865 162 865 51 STRAND 184 865 189 COLOUR_TEXT_REGION 184 865 189 865 51 STRAND 215 865 219 COLOUR_TEXT_REGION 215 865 219 865 51 STRAND 238 865 242 COLOUR_TEXT_REGION 238 865 242 865 51 STRAND 294 865 299 COLOUR_TEXT_REGION 294 865 299 865 51 HELIX 36 865 50 COLOUR_TEXT_REGION 36 865 50 865 50 HELIX 63 865 75 COLOUR_TEXT_REGION 63 865 75 865 50 HELIX 88 865 97 COLOUR_TEXT_REGION 88 865 97 865 50 HELIX 111 865 122 COLOUR_TEXT_REGION 111 865 122 865 50 HELIX 143 865 151 COLOUR_TEXT_REGION 143 865 151 865 50 HELIX 168 865 178 COLOUR_TEXT_REGION 168 865 178 865 50 HELIX 199 865 201 COLOUR_TEXT_REGION 199 865 201 865 50 HELIX 229 865 234 COLOUR_TEXT_REGION 229 865 234 865 50 HELIX 244 865 257 COLOUR_TEXT_REGION 244 865 257 865 50 HELIX 266 865 284 COLOUR_TEXT_REGION 266 865 284 865 50 HELIX 306 865 316 COLOUR_TEXT_REGION 306 865 316 865 50 STRAND 10 866 11 COLOUR_TEXT_REGION 10 866 11 866 51 STRAND 22 866 27 COLOUR_TEXT_REGION 22 866 27 866 51 STRAND 80 866 82 COLOUR_TEXT_REGION 80 866 82 866 51 STRAND 95 866 97 COLOUR_TEXT_REGION 95 866 97 866 51 STRAND 102 866 102 COLOUR_TEXT_REGION 102 866 102 866 51 STRAND 157 866 162 COLOUR_TEXT_REGION 157 866 162 866 51 STRAND 187 866 190 COLOUR_TEXT_REGION 187 866 190 866 51 STRAND 260 866 262 COLOUR_TEXT_REGION 260 866 262 866 51 STRAND 294 866 299 COLOUR_TEXT_REGION 294 866 299 866 51 HELIX 36 866 51 COLOUR_TEXT_REGION 36 866 51 866 50 HELIX 63 866 74 COLOUR_TEXT_REGION 63 866 74 866 50 HELIX 94 866 94 COLOUR_TEXT_REGION 94 866 94 866 50 HELIX 114 866 120 COLOUR_TEXT_REGION 114 866 120 866 50 HELIX 136 866 143 COLOUR_TEXT_REGION 136 866 143 866 50 HELIX 145 866 150 COLOUR_TEXT_REGION 145 866 150 866 50 HELIX 169 866 179 COLOUR_TEXT_REGION 169 866 179 866 50 HELIX 198 866 202 COLOUR_TEXT_REGION 198 866 202 866 50 HELIX 231 866 233 COLOUR_TEXT_REGION 231 866 233 866 50 HELIX 244 866 256 COLOUR_TEXT_REGION 244 866 256 866 50 HELIX 266 866 285 COLOUR_TEXT_REGION 266 866 285 866 50 HELIX 306 866 316 COLOUR_TEXT_REGION 306 866 316 866 50