SILENT_MODE
BLOCK_FILE jp_hAPqXB4.concise.blc
MAX_NSEQ 79
MAX_INPUT_LEN 81
OUTPUT_FILE jp_hAPqXB4.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 180 68   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 69 180 78 H SPACE
SUB_CHARS 1 69 180 78 E SPACE
SUB_CHARS 1 69 180 78 - SPACE
STRAND 4 72 11
COLOUR_TEXT_REGION 4 72 11 72 51
STRAND 19 72 22
COLOUR_TEXT_REGION 19 72 22 72 51
STRAND 40 72 44
COLOUR_TEXT_REGION 40 72 44 72 51
STRAND 55 72 56
COLOUR_TEXT_REGION 55 72 56 72 51
STRAND 62 72 69
COLOUR_TEXT_REGION 62 72 69 72 51
STRAND 77 72 86
COLOUR_TEXT_REGION 77 72 86 72 51
STRAND 91 72 99
COLOUR_TEXT_REGION 91 72 99 72 51
STRAND 105 72 109
COLOUR_TEXT_REGION 105 72 109 72 51
STRAND 113 72 127
COLOUR_TEXT_REGION 113 72 127 72 51
STRAND 136 72 140
COLOUR_TEXT_REGION 136 72 140 72 51
HELIX 146 72 149
COLOUR_TEXT_REGION 146 72 149 72 50
HELIX 164 72 168
COLOUR_TEXT_REGION 164 72 168 72 50
STRAND 4 77 11
COLOUR_TEXT_REGION 4 77 11 77 51
STRAND 19 77 22
COLOUR_TEXT_REGION 19 77 22 77 51
STRAND 40 77 44
COLOUR_TEXT_REGION 40 77 44 77 51
STRAND 55 77 59
COLOUR_TEXT_REGION 55 77 59 77 51
STRAND 62 77 69
COLOUR_TEXT_REGION 62 77 69 77 51
STRAND 77 77 86
COLOUR_TEXT_REGION 77 77 86 77 51
STRAND 91 77 99
COLOUR_TEXT_REGION 91 77 99 77 51
STRAND 105 77 109
COLOUR_TEXT_REGION 105 77 109 77 51
STRAND 112 77 126
COLOUR_TEXT_REGION 112 77 126 77 51
STRAND 136 77 140
COLOUR_TEXT_REGION 136 77 140 77 51
HELIX 146 77 149
COLOUR_TEXT_REGION 146 77 149 77 50
HELIX 164 77 168
COLOUR_TEXT_REGION 164 77 168 77 50
STRAND 3 78 11
COLOUR_TEXT_REGION 3 78 11 78 51
STRAND 18 78 22
COLOUR_TEXT_REGION 18 78 22 78 51
STRAND 41 78 44
COLOUR_TEXT_REGION 41 78 44 78 51
STRAND 63 78 69
COLOUR_TEXT_REGION 63 78 69 78 51
STRAND 77 78 86
COLOUR_TEXT_REGION 77 78 86 78 51
STRAND 91 78 99
COLOUR_TEXT_REGION 91 78 99 78 51
STRAND 105 78 109
COLOUR_TEXT_REGION 105 78 109 78 51
STRAND 114 78 128
COLOUR_TEXT_REGION 114 78 128 78 51
STRAND 133 78 139
COLOUR_TEXT_REGION 133 78 139 78 51
HELIX 164 78 168
COLOUR_TEXT_REGION 164 78 168 78 50