SILENT_MODE BLOCK_FILE jp_rUXIA0f.concise.blc MAX_NSEQ 816 MAX_INPUT_LEN 818 OUTPUT_FILE jp_rUXIA0f.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 335 805 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 806 335 815 H SPACE SUB_CHARS 1 806 335 815 E SPACE SUB_CHARS 1 806 335 815 - SPACE STRAND 61 809 66 COLOUR_TEXT_REGION 61 809 66 809 51 STRAND 72 809 73 COLOUR_TEXT_REGION 72 809 73 809 51 STRAND 110 809 115 COLOUR_TEXT_REGION 110 809 115 809 51 STRAND 171 809 174 COLOUR_TEXT_REGION 171 809 174 809 51 STRAND 198 809 201 COLOUR_TEXT_REGION 198 809 201 809 51 STRAND 257 809 260 COLOUR_TEXT_REGION 257 809 260 809 51 HELIX 3 809 8 COLOUR_TEXT_REGION 3 809 8 809 50 HELIX 16 809 28 COLOUR_TEXT_REGION 16 809 28 809 50 HELIX 36 809 50 COLOUR_TEXT_REGION 36 809 50 809 50 HELIX 83 809 93 COLOUR_TEXT_REGION 83 809 93 809 50 HELIX 98 809 105 COLOUR_TEXT_REGION 98 809 105 809 50 HELIX 147 809 166 COLOUR_TEXT_REGION 147 809 166 809 50 HELIX 182 809 192 COLOUR_TEXT_REGION 182 809 192 809 50 HELIX 208 809 221 COLOUR_TEXT_REGION 208 809 221 809 50 HELIX 229 809 236 COLOUR_TEXT_REGION 229 809 236 809 50 HELIX 239 809 253 COLOUR_TEXT_REGION 239 809 253 809 50 HELIX 263 809 284 COLOUR_TEXT_REGION 263 809 284 809 50 HELIX 290 809 301 COLOUR_TEXT_REGION 290 809 301 809 50 HELIX 313 809 333 COLOUR_TEXT_REGION 313 809 333 809 50 STRAND 61 814 66 COLOUR_TEXT_REGION 61 814 66 814 51 STRAND 72 814 73 COLOUR_TEXT_REGION 72 814 73 814 51 STRAND 110 814 117 COLOUR_TEXT_REGION 110 814 117 814 51 STRAND 171 814 174 COLOUR_TEXT_REGION 171 814 174 814 51 STRAND 201 814 203 COLOUR_TEXT_REGION 201 814 203 814 51 STRAND 257 814 260 COLOUR_TEXT_REGION 257 814 260 814 51 STRAND 284 814 284 COLOUR_TEXT_REGION 284 814 284 814 51 HELIX 3 814 8 COLOUR_TEXT_REGION 3 814 8 814 50 HELIX 16 814 28 COLOUR_TEXT_REGION 16 814 28 814 50 HELIX 36 814 49 COLOUR_TEXT_REGION 36 814 49 814 50 HELIX 83 814 93 COLOUR_TEXT_REGION 83 814 93 814 50 HELIX 98 814 105 COLOUR_TEXT_REGION 98 814 105 814 50 HELIX 127 814 130 COLOUR_TEXT_REGION 127 814 130 814 50 HELIX 147 814 166 COLOUR_TEXT_REGION 147 814 166 814 50 HELIX 182 814 192 COLOUR_TEXT_REGION 182 814 192 814 50 HELIX 197 814 200 COLOUR_TEXT_REGION 197 814 200 814 50 HELIX 208 814 221 COLOUR_TEXT_REGION 208 814 221 814 50 HELIX 229 814 236 COLOUR_TEXT_REGION 229 814 236 814 50 HELIX 239 814 253 COLOUR_TEXT_REGION 239 814 253 814 50 HELIX 263 814 280 COLOUR_TEXT_REGION 263 814 280 814 50 HELIX 290 814 301 COLOUR_TEXT_REGION 290 814 301 814 50 HELIX 315 814 333 COLOUR_TEXT_REGION 315 814 333 814 50 STRAND 61 815 66 COLOUR_TEXT_REGION 61 815 66 815 51 STRAND 72 815 73 COLOUR_TEXT_REGION 72 815 73 815 51 STRAND 110 815 115 COLOUR_TEXT_REGION 110 815 115 815 51 STRAND 171 815 174 COLOUR_TEXT_REGION 171 815 174 815 51 STRAND 198 815 201 COLOUR_TEXT_REGION 198 815 201 815 51 STRAND 257 815 260 COLOUR_TEXT_REGION 257 815 260 815 51 HELIX 3 815 9 COLOUR_TEXT_REGION 3 815 9 815 50 HELIX 16 815 29 COLOUR_TEXT_REGION 16 815 29 815 50 HELIX 35 815 50 COLOUR_TEXT_REGION 35 815 50 815 50 HELIX 82 815 94 COLOUR_TEXT_REGION 82 815 94 815 50 HELIX 99 815 105 COLOUR_TEXT_REGION 99 815 105 815 50 HELIX 147 815 166 COLOUR_TEXT_REGION 147 815 166 815 50 HELIX 183 815 193 COLOUR_TEXT_REGION 183 815 193 815 50 HELIX 208 815 222 COLOUR_TEXT_REGION 208 815 222 815 50 HELIX 229 815 236 COLOUR_TEXT_REGION 229 815 236 815 50 HELIX 239 815 253 COLOUR_TEXT_REGION 239 815 253 815 50 HELIX 263 815 285 COLOUR_TEXT_REGION 263 815 285 815 50 HELIX 291 815 301 COLOUR_TEXT_REGION 291 815 301 815 50 HELIX 312 815 333 COLOUR_TEXT_REGION 312 815 333 815 50