SILENT_MODE
BLOCK_FILE jp_Oay1wxp.concise.blc
MAX_NSEQ 792
MAX_INPUT_LEN 794
OUTPUT_FILE jp_Oay1wxp.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 92 781   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 782 92 791 H SPACE
SUB_CHARS 1 782 92 791 E SPACE
SUB_CHARS 1 782 92 791 - SPACE
STRAND 3 785 9
COLOUR_TEXT_REGION 3 785 9 785 51
STRAND 36 785 43
COLOUR_TEXT_REGION 36 785 43 785 51
STRAND 48 785 55
COLOUR_TEXT_REGION 48 785 55 785 51
STRAND 60 785 65
COLOUR_TEXT_REGION 60 785 65 785 51
HELIX 14 785 29
COLOUR_TEXT_REGION 14 785 29 785 50
HELIX 70 785 89
COLOUR_TEXT_REGION 70 785 89 785 50
STRAND 3 790 8
COLOUR_TEXT_REGION 3 790 8 790 51
STRAND 36 790 43
COLOUR_TEXT_REGION 36 790 43 790 51
STRAND 48 790 55
COLOUR_TEXT_REGION 48 790 55 790 51
STRAND 60 790 66
COLOUR_TEXT_REGION 60 790 66 790 51
HELIX 14 790 28
COLOUR_TEXT_REGION 14 790 28 790 50
HELIX 70 790 90
COLOUR_TEXT_REGION 70 790 90 790 50
STRAND 3 791 10
COLOUR_TEXT_REGION 3 791 10 791 51
STRAND 36 791 43
COLOUR_TEXT_REGION 36 791 43 791 51
STRAND 48 791 55
COLOUR_TEXT_REGION 48 791 55 791 51
STRAND 60 791 65
COLOUR_TEXT_REGION 60 791 65 791 51
HELIX 14 791 29
COLOUR_TEXT_REGION 14 791 29 791 50
HELIX 70 791 89
COLOUR_TEXT_REGION 70 791 89 791 50