SILENT_MODE BLOCK_FILE jp_EhNNqlA.concise.blc MAX_NSEQ 961 MAX_INPUT_LEN 963 OUTPUT_FILE jp_EhNNqlA.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 243 950 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 951 243 960 H SPACE SUB_CHARS 1 951 243 960 E SPACE SUB_CHARS 1 951 243 960 - SPACE STRAND 23 954 27 COLOUR_TEXT_REGION 23 954 27 954 51 STRAND 31 954 37 COLOUR_TEXT_REGION 31 954 37 954 51 STRAND 49 954 55 COLOUR_TEXT_REGION 49 954 55 954 51 STRAND 58 954 63 COLOUR_TEXT_REGION 58 954 63 954 51 STRAND 87 954 92 COLOUR_TEXT_REGION 87 954 92 954 51 STRAND 147 954 148 COLOUR_TEXT_REGION 147 954 148 954 51 STRAND 154 954 157 COLOUR_TEXT_REGION 154 954 157 954 51 STRAND 167 954 171 COLOUR_TEXT_REGION 167 954 171 954 51 STRAND 176 954 182 COLOUR_TEXT_REGION 176 954 182 954 51 STRAND 217 954 221 COLOUR_TEXT_REGION 217 954 221 954 51 HELIX 68 954 81 COLOUR_TEXT_REGION 68 954 81 954 50 HELIX 102 954 108 COLOUR_TEXT_REGION 102 954 108 954 50 HELIX 116 954 124 COLOUR_TEXT_REGION 116 954 124 954 50 HELIX 199 954 211 COLOUR_TEXT_REGION 199 954 211 954 50 HELIX 229 954 241 COLOUR_TEXT_REGION 229 954 241 954 50 STRAND 24 959 27 COLOUR_TEXT_REGION 24 959 27 959 51 STRAND 31 959 36 COLOUR_TEXT_REGION 31 959 36 959 51 STRAND 48 959 55 COLOUR_TEXT_REGION 48 959 55 959 51 STRAND 58 959 63 COLOUR_TEXT_REGION 58 959 63 959 51 STRAND 87 959 92 COLOUR_TEXT_REGION 87 959 92 959 51 STRAND 147 959 148 COLOUR_TEXT_REGION 147 959 148 959 51 STRAND 153 959 158 COLOUR_TEXT_REGION 153 959 158 959 51 STRAND 167 959 171 COLOUR_TEXT_REGION 167 959 171 959 51 STRAND 176 959 183 COLOUR_TEXT_REGION 176 959 183 959 51 STRAND 217 959 221 COLOUR_TEXT_REGION 217 959 221 959 51 HELIX 68 959 81 COLOUR_TEXT_REGION 68 959 81 959 50 HELIX 102 959 108 COLOUR_TEXT_REGION 102 959 108 959 50 HELIX 117 959 124 COLOUR_TEXT_REGION 117 959 124 959 50 HELIX 199 959 211 COLOUR_TEXT_REGION 199 959 211 959 50 HELIX 229 959 241 COLOUR_TEXT_REGION 229 959 241 959 50 STRAND 22 960 27 COLOUR_TEXT_REGION 22 960 27 960 51 STRAND 31 960 37 COLOUR_TEXT_REGION 31 960 37 960 51 STRAND 50 960 55 COLOUR_TEXT_REGION 50 960 55 960 51 STRAND 58 960 63 COLOUR_TEXT_REGION 58 960 63 960 51 STRAND 87 960 92 COLOUR_TEXT_REGION 87 960 92 960 51 STRAND 147 960 150 COLOUR_TEXT_REGION 147 960 150 960 51 STRAND 167 960 171 COLOUR_TEXT_REGION 167 960 171 960 51 STRAND 176 960 179 COLOUR_TEXT_REGION 176 960 179 960 51 STRAND 218 960 221 COLOUR_TEXT_REGION 218 960 221 960 51 HELIX 69 960 81 COLOUR_TEXT_REGION 69 960 81 960 50 HELIX 102 960 108 COLOUR_TEXT_REGION 102 960 108 960 50 HELIX 116 960 124 COLOUR_TEXT_REGION 116 960 124 960 50 HELIX 199 960 212 COLOUR_TEXT_REGION 199 960 212 960 50 HELIX 229 960 241 COLOUR_TEXT_REGION 229 960 241 960 50