QUERY : GGYMLGSAMSRPLIHFGNDYEDRYYRENMYRYPNQVYYRPVDQYNNQNSFVHDCVNITVKQHTVTTTTKGENFTETDIKIMERVVEQMCITQYQQES : QUERY
UniRef90_S7PWS7 : ------SAMSRPPMHFGNEYEDRYYRENMNRFPDQVYYKPVDQYNNQNNFVRDCVNITVKQHTVTTITKGENITETDVKIMERVVEEMCTTQYQKE- : UniRef90_S7PWS7
UniRef90_UPI000333C8EF : GGYMLGRAMSRPHVRFGSDYEDLYYRKNMYRYPNRVSYKPVDQYRNQNSFVQDCVNVTIKRHTVATSTKGENFSETDVKIMERALQQMCTTQYQE-- : UniRef90_UPI000333C8EF
UniRef90_UPI000462A379 : --FFLGRAMVQHALQFRNPAEEQWWYENRNRYSDHVYYPKYEQPVPADVFVRDCWNITVREFI--EPSGNETADEMESRVVAQVVHEMCVQQYRSYS : UniRef90_UPI000462A379
UniRef90_UPI000462A379 : ----FGGPMGNMQFQFNGSEEQQWWNENRYRLMGRIFQPNYSYPVPIDVFVNDCVNATMGEYM--KLSRNETAIETETRVLKRLVPEMCTKLYHNYS : UniRef90_UPI000462A379
UniRef90_UPI000442338D : ------RAMSKLHFHFNNQNEERWWYENRHRYSDRVYYPQYIQPVPQDIFVRDCVNITVKEYI--EPSGNETEDEIEARVVKHVVREMCIEQYR--- : UniRef90_UPI000442338D
UniRef90_UPI000442338D : -SYILGSPIANMYFHFNDSEEEHWWNENRLRFATHVYHPNYSQPVSKDAFLSECVNVTVGEY--VKPTGNQTQDELEARVVTQVANAKCMEMYHRIS : UniRef90_UPI000442338D
UniRef90_UPI000441BA3E : ------RAMSNLNFGFNNPYESQWWYENRNRYSDQVYYPKYDQPVSRDVFVRDCTNVTVTEYI--EPSGNKTADDMERKVVTQVVHQMCTEQYRLMS : UniRef90_UPI000441BA3E
UniRef90_E7CV28 : ------SAMSRPLIHFGNDYEDRYYRENMYRYPNQVYYRPVDHYSNQNNFVHDCVNITVKQHTVTTTTKGENFTETDIKIMERVVE----------- : UniRef90_E7CV28
UniRef90_UPI00042B9C0B : --YALGSAMSGMHLNFDHPDERQWWNENSNRYPNRVYYKQYDDHVPEGRFVRDCVNITVTQYNI-DPNENQNVTQVEVKVMTHVIQEMCVQQYQQY- : UniRef90_UPI00042B9C0B
UniRef90_H9G5Y7 : ------RSMSNMQFGFPNQYDERWWYQNRDRYSDQVYHPPYNPSVSREVFVRDCVNVTVTEYI--QPTGNQTADEVEMRVVPLVVREMCTEQYRLLS : UniRef90_H9G5Y7
UniRef90_A2BDI7 : ------RVMSGMQYRFDSPDEYRWWSENAARYPNQVYYRDYRGAVPQDVFVADCFNITVTEHNIGPAAKNQTEAELETRVVTKVIREMCIQQYQEY- : UniRef90_A2BDI7
UniRef90_UPI000203A70A : ---------------FRNPAEEQWWYENRNRYSDHVYYPKYEQPVPADVFVRDCWNITVREFI--EPSGNETADEMESRVVAQVVHEMCVQQYRSYS : UniRef90_UPI000203A70A
UniRef90_UPI000203A70A : ----FGGPMGNMQFQFNGSEEQQWWNENRYRLMGRIFQPNYSYPVPIDVFVNDCVNATMGEYM--KLSRNETAIETETRVLKRLVPEMCTKLYHNYS : UniRef90_UPI000203A70A
UniRef90_K7EZ76 : ----------GMRMNFDRPDESRWWNENQNRYPNQVYYREYDRSVPRGTFVNDCVNITVTEYKI-DPKENQNVTEIEVKVLKRVIQEMCIQQYQKY- : UniRef90_K7EZ76
UniRef90_B2CZE2 : ---------SRPPMHFGNEFEDRYYRENQNRYPNQVYYRPVDQYGSQDGFVRDCVNIT-VTQHTVTTTEGKNLNETDVKIMTRVLEQMCVNLY---- : UniRef90_B2CZE2
UniRef90_Q9I9C0 : ------SAMSGMRMNFDRPEERQWWNENSNRYPNQVYYKEYDRSVPEGRFVRDCLNNTVTEYKI-DPNENQNVTQVEVRVMKQVIQEMCM------- : UniRef90_Q9I9C0
UniRef90_F6QBG5 : ---------------FGNDYEDRYYRENQYRYPNQVMYRPIDQYNNQNNFVHDCVNITVKQHTTTTTTKGENFTETDIKIMERVVEQMCITQYQNE- : UniRef90_F6QBG5
UniRef90_A2BDH3 : --YMLGNAMGRMSYHFSNPMEARYYNDYYNQMPERVYRPMYEEHVSEDRFVTDCYNMSVTEYII-KPAEGKNTSEVETRVKSQIIREMCITEYRRGS : UniRef90_A2BDH3
UniRef90_Q7YRQ6 : ----------RPXIXFGNDYEDXYYXENMYRYPNQVYYRXVDXXSNZXNFVXDCVNITVKXHTVTTTTKGENFTETDIKIMEXVVEQMCITQYQRES : UniRef90_Q7YRQ6
UniRef90_UPI000462AEE9 : -------SLSHMELYFWDPKEERWWYEHRDSYPDMVYFRNYDQRPAPMTFIEDCVNITVSKFIVNQT------DEMEIKVVPHVVRQMCKEEY---- : UniRef90_UPI000462AEE9
UniRef90_UPI0003C2989B : ---------SGMHYRFNNPDENRWWNENNNRYPNSVYYKQYPEPVNQDRFVYDCVNITVTNYKLEPSH-NPNMTEMETKVMHQVIEQRCTQQYREY- : UniRef90_UPI0003C2989B
UniRef90_Q9TU20 : ------SAMSRPLIHFGNDYEDRYYRENMYRYPNQVYYKPVDQYSNQNSFVHDCVNITIKQHTVTT------------------------------- : UniRef90_Q9TU20
UniRef90_Q6JUY7 : ---------------------------------------PVDRYSNQNNFVHDCVNITVKQHTVTTTTKGENFTETDIKIMERVVEQMCITQYKRES : UniRef90_Q6JUY7
UniRef90_G3W0W3 : ----------KLSINFG--EEGNSYYEAHYKFPDEIHYVGAESSVTKDVFISNCVNVTHTANKLEPPEE-RNSSAIYSRVLEQLIKELCALKY---- : UniRef90_G3W0W3
UniRef90_UPI00045DC542 : ----------KLNIDFG--AEGNRYYENYWQFPDEIYYDGCSEAVTKEVFVTSCINTTQAANQEEFSREKHN-NKLYQRILWRLIRELC-------- : UniRef90_UPI00045DC542
UniRef90_UPI0004548B35 : ---------GRLSVDFG-PEGNGYYQANYPLLPDAIVYPDCPTANTREAFFGDCVNATH-EANRGELTAGGNASDVHVRVLLRLVEELCA------- : UniRef90_UPI0004548B35
UniRef90_A2BDI8 : ----------KLNINFGA-EGNRYYEANYWQFPDEIHYNGCSEAVTKEKFVISCINATQEANQEELSQEKQD-DKLYQRILWRLISELC-------- : UniRef90_A2BDI8
UniRef90_UPI00033313DA : ----------KLDIDFG--AEGNEYYENYWQFPDGIHYDGADANVTKEMFVASCINATQAANQAEFARKKQD-NQLYQRVLWRLIQELCASK----- : UniRef90_UPI00033313DA
UniRef90_UPI00017774E4 : ----------KLSIDFG-PEGNKYYEANYWQFPDGIHYDGSEGNVTKEVFVAKCINATQAANQGEFSREKQN--KLHQRVLWRLIKELC-------- : UniRef90_UPI00017774E4
UniRef90_E2QUM0 : ------------------PEGNRYYEANYWQFPDGIHYNGCSEAVTKEKFVTGCINATQVANQEELSREKQD-NKLHQRVLWRLIRELC-------- : UniRef90_E2QUM0
UniRef90_A5HNV9 : ----------KLDIDFGA-EGNRYYATNYWQFPDGIYYEGSDANVTKEVLVASCINTTQAANQAEFSREKPD-NKLHQRVLWRLIKEICSTKHCEY- : UniRef90_A5HNV9
UniRef90_UPI0003C170A7 : -----------PRIDFDSSEEERYYHSNPSSRYNQNYNQPYDQPEESTLFIELCYNNTITNHGLSVSPTGKTQTQEDLELKKQFIKYKCYMKY---- : UniRef90_UPI0003C170A7
: 1---------11--------21--------31--------41--------51--------61--------71--------81--------91----- :
OrigSeq : GGYMLGSAMSRPLIHFGNDYEDRYYRENMYRYPNQVYYRPVDQYNNQNSFVHDCVNITVKQHTVTTTTKGENFTETDIKIMERVVEQMCITQYQQES : OrigSeq
Jnet : ---E--------EE------H--HHHHHH--------------------EEEHHHHEEEEEEE-----------HHHHHHHHHHHHHHHHHHHHH-- : Jnet
jhmm : --EE--------EEE----HH--HHHHHH-------------------HHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH-- : jhmm
jpssm : ---HHHHH---------------HHHHH---------------------EEEEEEEEEEEEEEE----------HHHHHHHHHHHHHHHHHHHHH-- : jpssm
Lupas 14 : ------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21 : ------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28 : ------------------------------------------------------------------------------------------------- : Lupas 28
Jnet_25 : --BBBBBBBBBBBB-B-------BB------BB--BBB--B--------BB-BBBBBBB--B-B--------B--BBB-BB--BB--BB---B---- : Jnet_25
Jnet_5 : ----BB-BB--B-B-B--------B----------B-------------BB--B----B--------------------BB--BB---B-------- : Jnet_5
Jnet_0 : --------------------------------------------------B-------------------------------------B-------- : Jnet_0
Jnet Rel : 9911122425771217776103233432236777424677676777760000121101333201367777776027999999999999999987289 : Jnet Rel
Notes
Key:
Colour code for alignment:
Blue - Complete identity at a position
Shades of red - The more red a position is, the higher the level of
conservation of chemical properties of the amino acids
Jnet - Final secondary structure prediction for query
jalign - Jnet alignment prediction
jhmm - Jnet hmm profile prediction
jpssm - Jnet PSIBLAST pssm profile prediction
Lupas - Lupas Coil prediction (window size of 14, 21 and 28)
Note on coiled coil predictions - = less than 50% probability
c = between 50% and 90% probability
C = greater than 90% probability
Jnet_25 - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5 - Jnet prediction of burial, less than 5% exposure
Jnet_0 - Jnet prediction of burial, 0% exposure
Jnet Rel - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.