SILENT_MODE BLOCK_FILE jp_uBVoR7E.concise.blc MAX_NSEQ 969 MAX_INPUT_LEN 971 OUTPUT_FILE jp_uBVoR7E.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 84 958 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 959 84 968 H SPACE SUB_CHARS 1 959 84 968 E SPACE SUB_CHARS 1 959 84 968 - SPACE STRAND 0 962 6 COLOUR_TEXT_REGION 0 962 6 962 51 STRAND 27 962 30 COLOUR_TEXT_REGION 27 962 30 962 51 STRAND 51 962 55 COLOUR_TEXT_REGION 51 962 55 962 51 STRAND 58 962 61 COLOUR_TEXT_REGION 58 962 61 962 51 HELIX 12 962 22 COLOUR_TEXT_REGION 12 962 22 962 50 HELIX 36 962 45 COLOUR_TEXT_REGION 36 962 45 962 50 HELIX 65 962 81 COLOUR_TEXT_REGION 65 962 81 962 50 STRAND 0 967 6 COLOUR_TEXT_REGION 0 967 6 967 51 STRAND 27 967 31 COLOUR_TEXT_REGION 27 967 31 967 51 STRAND 51 967 55 COLOUR_TEXT_REGION 51 967 55 967 51 STRAND 58 967 61 COLOUR_TEXT_REGION 58 967 61 967 51 HELIX 12 967 22 COLOUR_TEXT_REGION 12 967 22 967 50 HELIX 36 967 45 COLOUR_TEXT_REGION 36 967 45 967 50 HELIX 65 967 77 COLOUR_TEXT_REGION 65 967 77 967 50 STRAND 0 968 6 COLOUR_TEXT_REGION 0 968 6 968 51 STRAND 28 968 29 COLOUR_TEXT_REGION 28 968 29 968 51 STRAND 49 968 55 COLOUR_TEXT_REGION 49 968 55 968 51 STRAND 58 968 61 COLOUR_TEXT_REGION 58 968 61 968 51 HELIX 12 968 22 COLOUR_TEXT_REGION 12 968 22 968 50 HELIX 36 968 45 COLOUR_TEXT_REGION 36 968 45 968 50 HELIX 65 968 82 COLOUR_TEXT_REGION 65 968 82 968 50