SILENT_MODE
BLOCK_FILE jp_lZRCQ_9.concise.blc
MAX_NSEQ 880
MAX_INPUT_LEN 882
OUTPUT_FILE jp_lZRCQ_9.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 80 869   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 870 80 879 H SPACE
SUB_CHARS 1 870 80 879 E SPACE
SUB_CHARS 1 870 80 879 - SPACE
STRAND 27 873 34
COLOUR_TEXT_REGION 27 873 34 873 51
STRAND 38 873 46
COLOUR_TEXT_REGION 38 873 46 873 51
STRAND 52 873 59
COLOUR_TEXT_REGION 52 873 59 873 51
HELIX 4 873 19
COLOUR_TEXT_REGION 4 873 19 873 50
HELIX 64 873 78
COLOUR_TEXT_REGION 64 873 78 873 50
STRAND 28 878 34
COLOUR_TEXT_REGION 28 878 34 878 51
STRAND 38 878 46
COLOUR_TEXT_REGION 38 878 46 878 51
STRAND 52 878 59
COLOUR_TEXT_REGION 52 878 59 878 51
HELIX 3 878 18
COLOUR_TEXT_REGION 3 878 18 878 50
HELIX 64 878 78
COLOUR_TEXT_REGION 64 878 78 878 50
STRAND 25 879 34
COLOUR_TEXT_REGION 25 879 34 879 51
STRAND 38 879 46
COLOUR_TEXT_REGION 38 879 46 879 51
STRAND 52 879 59
COLOUR_TEXT_REGION 52 879 59 879 51
HELIX 5 879 19
COLOUR_TEXT_REGION 5 879 19 879 50
HELIX 64 879 78
COLOUR_TEXT_REGION 64 879 78 879 50