SILENT_MODE
BLOCK_FILE jp_fkl6g3u.concise.blc
MAX_NSEQ 905
MAX_INPUT_LEN 907
OUTPUT_FILE jp_fkl6g3u.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 118 894   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 895 118 904 H SPACE
SUB_CHARS 1 895 118 904 E SPACE
SUB_CHARS 1 895 118 904 - SPACE
STRAND 8 898 14
COLOUR_TEXT_REGION 8 898 14 898 51
STRAND 36 898 39
COLOUR_TEXT_REGION 36 898 39 898 51
STRAND 59 898 64
COLOUR_TEXT_REGION 59 898 64 898 51
STRAND 73 898 78
COLOUR_TEXT_REGION 73 898 78 898 51
STRAND 84 898 87
COLOUR_TEXT_REGION 84 898 87 898 51
HELIX 18 898 32
COLOUR_TEXT_REGION 18 898 32 898 50
HELIX 46 898 55
COLOUR_TEXT_REGION 46 898 55 898 50
HELIX 89 898 115
COLOUR_TEXT_REGION 89 898 115 898 50
STRAND 7 903 14
COLOUR_TEXT_REGION 7 903 14 903 51
STRAND 36 903 40
COLOUR_TEXT_REGION 36 903 40 903 51
STRAND 59 903 64
COLOUR_TEXT_REGION 59 903 64 903 51
STRAND 73 903 78
COLOUR_TEXT_REGION 73 903 78 903 51
STRAND 84 903 87
COLOUR_TEXT_REGION 84 903 87 903 51
HELIX 17 903 32
COLOUR_TEXT_REGION 17 903 32 903 50
HELIX 46 903 55
COLOUR_TEXT_REGION 46 903 55 903 50
HELIX 89 903 115
COLOUR_TEXT_REGION 89 903 115 903 50
STRAND 8 904 14
COLOUR_TEXT_REGION 8 904 14 904 51
STRAND 36 904 39
COLOUR_TEXT_REGION 36 904 39 904 51
STRAND 60 904 64
COLOUR_TEXT_REGION 60 904 64 904 51
STRAND 73 904 78
COLOUR_TEXT_REGION 73 904 78 904 51
STRAND 84 904 87
COLOUR_TEXT_REGION 84 904 87 904 51
HELIX 19 904 32
COLOUR_TEXT_REGION 19 904 32 904 50
HELIX 47 904 55
COLOUR_TEXT_REGION 47 904 55 904 50
HELIX 67 904 69
COLOUR_TEXT_REGION 67 904 69 904 50
HELIX 89 904 115
COLOUR_TEXT_REGION 89 904 115 904 50