SILENT_MODE
BLOCK_FILE jp_lyRAszr.concise.blc
MAX_NSEQ 800
MAX_INPUT_LEN 802
OUTPUT_FILE jp_lyRAszr.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 92 789   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 790 92 799 H SPACE
SUB_CHARS 1 790 92 799 E SPACE
SUB_CHARS 1 790 92 799 - SPACE
STRAND 43 793 49
COLOUR_TEXT_REGION 43 793 49 793 51
STRAND 51 793 54
COLOUR_TEXT_REGION 51 793 54 793 51
HELIX 7 793 17
COLOUR_TEXT_REGION 7 793 17 793 50
HELIX 27 793 33
COLOUR_TEXT_REGION 27 793 33 793 50
HELIX 62 793 69
COLOUR_TEXT_REGION 62 793 69 793 50
HELIX 74 793 78
COLOUR_TEXT_REGION 74 793 78 793 50
HELIX 82 793 89
COLOUR_TEXT_REGION 82 793 89 793 50
STRAND 43 798 54
COLOUR_TEXT_REGION 43 798 54 798 51
HELIX 7 798 16
COLOUR_TEXT_REGION 7 798 16 798 50
HELIX 27 798 33
COLOUR_TEXT_REGION 27 798 33 798 50
HELIX 62 798 69
COLOUR_TEXT_REGION 62 798 69 798 50
HELIX 74 798 78
COLOUR_TEXT_REGION 74 798 78 798 50
HELIX 82 798 90
COLOUR_TEXT_REGION 82 798 90 798 50
STRAND 43 799 48
COLOUR_TEXT_REGION 43 799 48 799 51
STRAND 52 799 53
COLOUR_TEXT_REGION 52 799 53 799 51
HELIX 8 799 17
COLOUR_TEXT_REGION 8 799 17 799 50
HELIX 27 799 33
COLOUR_TEXT_REGION 27 799 33 799 50
HELIX 62 799 69
COLOUR_TEXT_REGION 62 799 69 799 50
HELIX 74 799 79
COLOUR_TEXT_REGION 74 799 79 799 50
HELIX 82 799 89
COLOUR_TEXT_REGION 82 799 89 799 50