SILENT_MODE
BLOCK_FILE jp_qMgDzEm.concise.blc
MAX_NSEQ 482
MAX_INPUT_LEN 484
OUTPUT_FILE jp_qMgDzEm.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 110 471   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 472 110 481 H SPACE
SUB_CHARS 1 472 110 481 E SPACE
SUB_CHARS 1 472 110 481 - SPACE
STRAND 3 475 9
COLOUR_TEXT_REGION 3 475 9 475 51
STRAND 47 475 53
COLOUR_TEXT_REGION 47 475 53 475 51
STRAND 62 475 69
COLOUR_TEXT_REGION 62 475 69 475 51
STRAND 99 475 104
COLOUR_TEXT_REGION 99 475 104 475 51
HELIX 14 475 41
COLOUR_TEXT_REGION 14 475 41 475 50
HELIX 75 475 95
COLOUR_TEXT_REGION 75 475 95 475 50
STRAND 3 480 9
COLOUR_TEXT_REGION 3 480 9 480 51
STRAND 47 480 53
COLOUR_TEXT_REGION 47 480 53 480 51
STRAND 62 480 69
COLOUR_TEXT_REGION 62 480 69 480 51
STRAND 98 480 104
COLOUR_TEXT_REGION 98 480 104 480 51
HELIX 14 480 41
COLOUR_TEXT_REGION 14 480 41 480 50
HELIX 75 480 95
COLOUR_TEXT_REGION 75 480 95 480 50
STRAND 3 481 9
COLOUR_TEXT_REGION 3 481 9 481 51
STRAND 47 481 54
COLOUR_TEXT_REGION 47 481 54 481 51
STRAND 62 481 71
COLOUR_TEXT_REGION 62 481 71 481 51
STRAND 99 481 104
COLOUR_TEXT_REGION 99 481 104 481 51
HELIX 14 481 41
COLOUR_TEXT_REGION 14 481 41 481 50
HELIX 73 481 94
COLOUR_TEXT_REGION 73 481 94 481 50