SILENT_MODE
BLOCK_FILE jp_79YhS2Y.concise.blc
MAX_NSEQ 853
MAX_INPUT_LEN 855
OUTPUT_FILE jp_79YhS2Y.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 223 842   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 843 223 852 H SPACE
SUB_CHARS 1 843 223 852 E SPACE
SUB_CHARS 1 843 223 852 - SPACE
STRAND 6 846 6
COLOUR_TEXT_REGION 6 846 6 846 51
STRAND 14 846 19
COLOUR_TEXT_REGION 14 846 19 846 51
STRAND 24 846 30
COLOUR_TEXT_REGION 24 846 30 846 51
STRAND 34 846 39
COLOUR_TEXT_REGION 34 846 39 846 51
STRAND 48 846 53
COLOUR_TEXT_REGION 48 846 53 846 51
STRAND 63 846 71
COLOUR_TEXT_REGION 63 846 71 846 51
STRAND 85 846 90
COLOUR_TEXT_REGION 85 846 90 846 51
STRAND 116 846 123
COLOUR_TEXT_REGION 116 846 123 846 51
STRAND 185 846 192
COLOUR_TEXT_REGION 185 846 192 846 51
STRAND 205 846 208
COLOUR_TEXT_REGION 205 846 208 846 51
HELIX 213 846 221
COLOUR_TEXT_REGION 213 846 221 846 50
STRAND 14 851 19
COLOUR_TEXT_REGION 14 851 19 851 51
STRAND 23 851 30
COLOUR_TEXT_REGION 23 851 30 851 51
STRAND 34 851 40
COLOUR_TEXT_REGION 34 851 40 851 51
STRAND 48 851 54
COLOUR_TEXT_REGION 48 851 54 851 51
STRAND 63 851 72
COLOUR_TEXT_REGION 63 851 72 851 51
STRAND 85 851 90
COLOUR_TEXT_REGION 85 851 90 851 51
STRAND 100 851 104
COLOUR_TEXT_REGION 100 851 104 851 51
STRAND 116 851 124
COLOUR_TEXT_REGION 116 851 124 851 51
STRAND 136 851 138
COLOUR_TEXT_REGION 136 851 138 851 51
STRAND 161 851 163
COLOUR_TEXT_REGION 161 851 163 851 51
STRAND 185 851 194
COLOUR_TEXT_REGION 185 851 194 851 51
STRAND 205 851 208
COLOUR_TEXT_REGION 205 851 208 851 51
HELIX 213 851 221
COLOUR_TEXT_REGION 213 851 221 851 50
STRAND 5 852 6
COLOUR_TEXT_REGION 5 852 6 852 51
STRAND 14 852 19
COLOUR_TEXT_REGION 14 852 19 852 51
STRAND 24 852 30
COLOUR_TEXT_REGION 24 852 30 852 51
STRAND 34 852 37
COLOUR_TEXT_REGION 34 852 37 852 51
STRAND 63 852 65
COLOUR_TEXT_REGION 63 852 65 852 51
STRAND 185 852 191
COLOUR_TEXT_REGION 185 852 191 852 51
STRAND 205 852 208
COLOUR_TEXT_REGION 205 852 208 852 51
HELIX 46 852 49
COLOUR_TEXT_REGION 46 852 49 852 50
HELIX 84 852 90
COLOUR_TEXT_REGION 84 852 90 852 50
HELIX 213 852 221
COLOUR_TEXT_REGION 213 852 221 852 50