SILENT_MODE
BLOCK_FILE jp_Zl10WRF.concise.blc
MAX_NSEQ 65
MAX_INPUT_LEN 67
OUTPUT_FILE jp_Zl10WRF.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 86 54   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 55 86 64 H SPACE
SUB_CHARS 1 55 86 64 E SPACE
SUB_CHARS 1 55 86 64 - SPACE
STRAND 24 58 25
COLOUR_TEXT_REGION 24 58 25 58 51
STRAND 51 58 53
COLOUR_TEXT_REGION 51 58 53 58 51
HELIX 9 58 16
COLOUR_TEXT_REGION 9 58 16 58 50
HELIX 27 58 41
COLOUR_TEXT_REGION 27 58 41 58 50
HELIX 73 58 80
COLOUR_TEXT_REGION 73 58 80 58 50
STRAND 4 63 5
COLOUR_TEXT_REGION 4 63 5 63 51
STRAND 24 63 25
COLOUR_TEXT_REGION 24 63 25 63 51
STRAND 51 63 53
COLOUR_TEXT_REGION 51 63 53 63 51
HELIX 9 63 17
COLOUR_TEXT_REGION 9 63 17 63 50
HELIX 27 63 39
COLOUR_TEXT_REGION 27 63 39 63 50
HELIX 73 63 80
COLOUR_TEXT_REGION 73 63 80 63 50
STRAND 24 64 26
COLOUR_TEXT_REGION 24 64 26 64 51
STRAND 51 64 53
COLOUR_TEXT_REGION 51 64 53 64 51
HELIX 9 64 14
COLOUR_TEXT_REGION 9 64 14 64 50
HELIX 27 64 42
COLOUR_TEXT_REGION 27 64 42 64 50
HELIX 74 64 80
COLOUR_TEXT_REGION 74 64 80 64 50