SILENT_MODE
BLOCK_FILE jp_zpBRyec.concise.blc
MAX_NSEQ 92
MAX_INPUT_LEN 94
OUTPUT_FILE jp_zpBRyec.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 89 81   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 82 89 91 H SPACE
SUB_CHARS 1 82 89 91 E SPACE
SUB_CHARS 1 82 89 91 - SPACE
HELIX 10 85 14
COLOUR_TEXT_REGION 10 85 14 85 50
HELIX 16 85 37
COLOUR_TEXT_REGION 16 85 37 85 50
HELIX 44 85 83
COLOUR_TEXT_REGION 44 85 83 85 50
STRAND 71 90 73
COLOUR_TEXT_REGION 71 90 73 90 51
STRAND 78 90 83
COLOUR_TEXT_REGION 78 90 83 90 51
HELIX 9 90 13
COLOUR_TEXT_REGION 9 90 13 90 50
HELIX 16 90 37
COLOUR_TEXT_REGION 16 90 37 90 50
HELIX 44 90 68
COLOUR_TEXT_REGION 44 90 68 90 50
HELIX 13 91 21
COLOUR_TEXT_REGION 13 91 21 91 50
HELIX 26 91 35
COLOUR_TEXT_REGION 26 91 35 91 50
HELIX 45 91 51
COLOUR_TEXT_REGION 45 91 51 91 50
HELIX 53 91 53
COLOUR_TEXT_REGION 53 91 53 91 50
HELIX 59 91 84
COLOUR_TEXT_REGION 59 91 84 91 50