SILENT_MODE
BLOCK_FILE jp_yYNCN1T.concise.blc
MAX_NSEQ 83
MAX_INPUT_LEN 85
OUTPUT_FILE jp_yYNCN1T.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 181 72   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 73 181 82 H SPACE
SUB_CHARS 1 73 181 82 E SPACE
SUB_CHARS 1 73 181 82 - SPACE
STRAND 2 76 6
COLOUR_TEXT_REGION 2 76 6 76 51
STRAND 37 76 41
COLOUR_TEXT_REGION 37 76 41 76 51
STRAND 51 76 56
COLOUR_TEXT_REGION 51 76 56 76 51
STRAND 63 76 68
COLOUR_TEXT_REGION 63 76 68 76 51
STRAND 70 76 71
COLOUR_TEXT_REGION 70 76 71 76 51
STRAND 87 76 88
COLOUR_TEXT_REGION 87 76 88 76 51
STRAND 105 76 114
COLOUR_TEXT_REGION 105 76 114 76 51
STRAND 139 76 140
COLOUR_TEXT_REGION 139 76 140 76 51
HELIX 13 76 25
COLOUR_TEXT_REGION 13 76 25 76 50
HELIX 148 76 157
COLOUR_TEXT_REGION 148 76 157 76 50
HELIX 167 76 172
COLOUR_TEXT_REGION 167 76 172 76 50
STRAND 2 81 6
COLOUR_TEXT_REGION 2 81 6 81 51
STRAND 37 81 41
COLOUR_TEXT_REGION 37 81 41 81 51
STRAND 51 81 56
COLOUR_TEXT_REGION 51 81 56 81 51
STRAND 63 81 68
COLOUR_TEXT_REGION 63 81 68 81 51
STRAND 87 81 87
COLOUR_TEXT_REGION 87 81 87 81 51
STRAND 105 81 107
COLOUR_TEXT_REGION 105 81 107 81 51
STRAND 110 81 114
COLOUR_TEXT_REGION 110 81 114 81 51
STRAND 139 81 140
COLOUR_TEXT_REGION 139 81 140 81 51
HELIX 13 81 25
COLOUR_TEXT_REGION 13 81 25 81 50
HELIX 148 81 157
COLOUR_TEXT_REGION 148 81 157 81 50
HELIX 169 81 172
COLOUR_TEXT_REGION 169 81 172 81 50
STRAND 2 82 6
COLOUR_TEXT_REGION 2 82 6 82 51
STRAND 38 82 39
COLOUR_TEXT_REGION 38 82 39 82 51
STRAND 51 82 56
COLOUR_TEXT_REGION 51 82 56 82 51
STRAND 63 82 74
COLOUR_TEXT_REGION 63 82 74 82 51
STRAND 80 82 84
COLOUR_TEXT_REGION 80 82 84 82 51
STRAND 87 82 89
COLOUR_TEXT_REGION 87 82 89 82 51
STRAND 105 82 114
COLOUR_TEXT_REGION 105 82 114 82 51
STRAND 139 82 139
COLOUR_TEXT_REGION 139 82 139 82 51
HELIX 14 82 24
COLOUR_TEXT_REGION 14 82 24 82 50
HELIX 148 82 157
COLOUR_TEXT_REGION 148 82 157 82 50
HELIX 166 82 171
COLOUR_TEXT_REGION 166 82 171 82 50