SILENT_MODE BLOCK_FILE jp_GLHgGyx.concise.blc MAX_NSEQ 348 MAX_INPUT_LEN 350 OUTPUT_FILE jp_GLHgGyx.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 122 337 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 338 122 347 H SPACE SUB_CHARS 1 338 122 347 E SPACE SUB_CHARS 1 338 122 347 - SPACE STRAND 6 341 11 COLOUR_TEXT_REGION 6 341 11 341 51 STRAND 47 341 49 COLOUR_TEXT_REGION 47 341 49 341 51 STRAND 63 341 68 COLOUR_TEXT_REGION 63 341 68 341 51 STRAND 75 341 82 COLOUR_TEXT_REGION 75 341 82 341 51 STRAND 108 341 118 COLOUR_TEXT_REGION 108 341 118 341 51 HELIX 93 341 99 COLOUR_TEXT_REGION 93 341 99 341 50 STRAND 6 346 11 COLOUR_TEXT_REGION 6 346 11 346 51 STRAND 28 346 30 COLOUR_TEXT_REGION 28 346 30 346 51 STRAND 47 346 47 COLOUR_TEXT_REGION 47 346 47 346 51 STRAND 63 346 68 COLOUR_TEXT_REGION 63 346 68 346 51 STRAND 75 346 82 COLOUR_TEXT_REGION 75 346 82 346 51 STRAND 107 346 117 COLOUR_TEXT_REGION 107 346 117 346 51 HELIX 93 346 99 COLOUR_TEXT_REGION 93 346 99 346 50 STRAND 6 347 11 COLOUR_TEXT_REGION 6 347 11 347 51 STRAND 47 347 49 COLOUR_TEXT_REGION 47 347 49 347 51 STRAND 64 347 69 COLOUR_TEXT_REGION 64 347 69 347 51 STRAND 75 347 82 COLOUR_TEXT_REGION 75 347 82 347 51 STRAND 110 347 118 COLOUR_TEXT_REGION 110 347 118 347 51 HELIX 93 347 99 COLOUR_TEXT_REGION 93 347 99 347 50