SILENT_MODE BLOCK_FILE jp_ffAA4pw.concise.blc MAX_NSEQ 464 MAX_INPUT_LEN 466 OUTPUT_FILE jp_ffAA4pw.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 95 453 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 454 95 463 H SPACE SUB_CHARS 1 454 95 463 E SPACE SUB_CHARS 1 454 95 463 - SPACE STRAND 3 457 15 COLOUR_TEXT_REGION 3 457 15 457 51 STRAND 23 457 29 COLOUR_TEXT_REGION 23 457 29 457 51 STRAND 40 457 46 COLOUR_TEXT_REGION 40 457 46 457 51 STRAND 53 457 59 COLOUR_TEXT_REGION 53 457 59 457 51 STRAND 64 457 66 COLOUR_TEXT_REGION 64 457 66 457 51 STRAND 74 457 86 COLOUR_TEXT_REGION 74 457 86 457 51 STRAND 91 457 93 COLOUR_TEXT_REGION 91 457 93 457 51 STRAND 3 462 15 COLOUR_TEXT_REGION 3 462 15 462 51 STRAND 23 462 29 COLOUR_TEXT_REGION 23 462 29 462 51 STRAND 40 462 46 COLOUR_TEXT_REGION 40 462 46 462 51 STRAND 53 462 59 COLOUR_TEXT_REGION 53 462 59 462 51 STRAND 63 462 66 COLOUR_TEXT_REGION 63 462 66 462 51 STRAND 74 462 87 COLOUR_TEXT_REGION 74 462 87 462 51 STRAND 91 462 93 COLOUR_TEXT_REGION 91 462 93 462 51 STRAND 3 463 15 COLOUR_TEXT_REGION 3 463 15 463 51 STRAND 24 463 29 COLOUR_TEXT_REGION 24 463 29 463 51 STRAND 40 463 46 COLOUR_TEXT_REGION 40 463 46 463 51 STRAND 54 463 59 COLOUR_TEXT_REGION 54 463 59 463 51 STRAND 64 463 66 COLOUR_TEXT_REGION 64 463 66 463 51 STRAND 74 463 86 COLOUR_TEXT_REGION 74 463 86 463 51 STRAND 91 463 93 COLOUR_TEXT_REGION 91 463 93 463 51