SILENT_MODE
BLOCK_FILE jp_SpjgFHd.concise.blc
MAX_NSEQ 983
MAX_INPUT_LEN 985
OUTPUT_FILE jp_SpjgFHd.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 185 972   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 973 185 982 H SPACE
SUB_CHARS 1 973 185 982 E SPACE
SUB_CHARS 1 973 185 982 - SPACE
STRAND 3 976 7
COLOUR_TEXT_REGION 3 976 7 976 51
STRAND 56 976 60
COLOUR_TEXT_REGION 56 976 60 976 51
STRAND 65 976 70
COLOUR_TEXT_REGION 65 976 70 976 51
STRAND 83 976 90
COLOUR_TEXT_REGION 83 976 90 976 51
STRAND 119 976 124
COLOUR_TEXT_REGION 119 976 124 976 51
STRAND 140 976 145
COLOUR_TEXT_REGION 140 976 145 976 51
STRAND 149 976 149
COLOUR_TEXT_REGION 149 976 149 976 51
STRAND 155 976 164
COLOUR_TEXT_REGION 155 976 164 976 51
HELIX 12 976 25
COLOUR_TEXT_REGION 12 976 25 976 50
HELIX 38 976 48
COLOUR_TEXT_REGION 38 976 48 976 50
HELIX 99 976 113
COLOUR_TEXT_REGION 99 976 113 976 50
HELIX 128 976 136
COLOUR_TEXT_REGION 128 976 136 976 50
HELIX 148 976 148
COLOUR_TEXT_REGION 148 976 148 976 50
STRAND 3 981 7
COLOUR_TEXT_REGION 3 981 7 981 51
STRAND 55 981 61
COLOUR_TEXT_REGION 55 981 61 981 51
STRAND 65 981 71
COLOUR_TEXT_REGION 65 981 71 981 51
STRAND 83 981 90
COLOUR_TEXT_REGION 83 981 90 981 51
STRAND 117 981 124
COLOUR_TEXT_REGION 117 981 124 981 51
STRAND 140 981 150
COLOUR_TEXT_REGION 140 981 150 981 51
STRAND 155 981 163
COLOUR_TEXT_REGION 155 981 163 981 51
HELIX 11 981 25
COLOUR_TEXT_REGION 11 981 25 981 50
HELIX 38 981 48
COLOUR_TEXT_REGION 38 981 48 981 50
HELIX 98 981 113
COLOUR_TEXT_REGION 98 981 113 981 50
HELIX 128 981 136
COLOUR_TEXT_REGION 128 981 136 981 50
STRAND 3 982 7
COLOUR_TEXT_REGION 3 982 7 982 51
STRAND 64 982 69
COLOUR_TEXT_REGION 64 982 69 982 51
STRAND 121 982 123
COLOUR_TEXT_REGION 121 982 123 982 51
STRAND 155 982 164
COLOUR_TEXT_REGION 155 982 164 982 51
HELIX 13 982 25
COLOUR_TEXT_REGION 13 982 25 982 50
HELIX 38 982 48
COLOUR_TEXT_REGION 38 982 48 982 50
HELIX 82 982 89
COLOUR_TEXT_REGION 82 982 89 982 50
HELIX 101 982 114
COLOUR_TEXT_REGION 101 982 114 982 50
HELIX 128 982 137
COLOUR_TEXT_REGION 128 982 137 982 50
HELIX 139 982 145
COLOUR_TEXT_REGION 139 982 145 982 50
HELIX 148 982 148
COLOUR_TEXT_REGION 148 982 148 982 50