SILENT_MODE
BLOCK_FILE jp_Glr9TT4.concise.blc
MAX_NSEQ 783
MAX_INPUT_LEN 785
OUTPUT_FILE jp_Glr9TT4.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 133 772   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 773 133 782 H SPACE
SUB_CHARS 1 773 133 782 E SPACE
SUB_CHARS 1 773 133 782 - SPACE
STRAND 26 776 33
COLOUR_TEXT_REGION 26 776 33 776 51
STRAND 37 776 42
COLOUR_TEXT_REGION 37 776 42 776 51
STRAND 63 776 69
COLOUR_TEXT_REGION 63 776 69 776 51
STRAND 77 776 83
COLOUR_TEXT_REGION 77 776 83 776 51
STRAND 109 776 115
COLOUR_TEXT_REGION 109 776 115 776 51
HELIX 10 776 20
COLOUR_TEXT_REGION 10 776 20 776 50
HELIX 50 776 56
COLOUR_TEXT_REGION 50 776 56 776 50
HELIX 90 776 105
COLOUR_TEXT_REGION 90 776 105 776 50
HELIX 123 776 131
COLOUR_TEXT_REGION 123 776 131 776 50
STRAND 26 781 33
COLOUR_TEXT_REGION 26 781 33 781 51
STRAND 37 781 42
COLOUR_TEXT_REGION 37 781 42 781 51
STRAND 63 781 69
COLOUR_TEXT_REGION 63 781 69 781 51
STRAND 77 781 83
COLOUR_TEXT_REGION 77 781 83 781 51
STRAND 109 781 115
COLOUR_TEXT_REGION 109 781 115 781 51
HELIX 10 781 20
COLOUR_TEXT_REGION 10 781 20 781 50
HELIX 50 781 55
COLOUR_TEXT_REGION 50 781 55 781 50
HELIX 92 781 95
COLOUR_TEXT_REGION 92 781 95 781 50
HELIX 99 781 106
COLOUR_TEXT_REGION 99 781 106 781 50
HELIX 123 781 131
COLOUR_TEXT_REGION 123 781 131 781 50
STRAND 26 782 33
COLOUR_TEXT_REGION 26 782 33 782 51
STRAND 37 782 42
COLOUR_TEXT_REGION 37 782 42 782 51
STRAND 64 782 69
COLOUR_TEXT_REGION 64 782 69 782 51
STRAND 77 782 83
COLOUR_TEXT_REGION 77 782 83 782 51
STRAND 109 782 115
COLOUR_TEXT_REGION 109 782 115 782 51
HELIX 10 782 21
COLOUR_TEXT_REGION 10 782 21 782 50
HELIX 51 782 56
COLOUR_TEXT_REGION 51 782 56 782 50
HELIX 89 782 105
COLOUR_TEXT_REGION 89 782 105 782 50
HELIX 123 782 130
COLOUR_TEXT_REGION 123 782 130 782 50