SILENT_MODE BLOCK_FILE jp_M6TwOsp.concise.blc MAX_NSEQ 913 MAX_INPUT_LEN 915 OUTPUT_FILE jp_M6TwOsp.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 131 902 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 903 131 912 H SPACE SUB_CHARS 1 903 131 912 E SPACE SUB_CHARS 1 903 131 912 - SPACE STRAND 71 906 71 COLOUR_TEXT_REGION 71 906 71 906 51 HELIX 6 906 20 COLOUR_TEXT_REGION 6 906 20 906 50 HELIX 25 906 35 COLOUR_TEXT_REGION 25 906 35 906 50 HELIX 44 906 65 COLOUR_TEXT_REGION 44 906 65 906 50 HELIX 78 906 95 COLOUR_TEXT_REGION 78 906 95 906 50 HELIX 106 906 117 COLOUR_TEXT_REGION 106 906 117 906 50 HELIX 119 906 125 COLOUR_TEXT_REGION 119 906 125 906 50 STRAND 70 911 72 COLOUR_TEXT_REGION 70 911 72 911 51 HELIX 6 911 20 COLOUR_TEXT_REGION 6 911 20 911 50 HELIX 26 911 35 COLOUR_TEXT_REGION 26 911 35 911 50 HELIX 44 911 65 COLOUR_TEXT_REGION 44 911 65 911 50 HELIX 78 911 94 COLOUR_TEXT_REGION 78 911 94 911 50 HELIX 106 911 116 COLOUR_TEXT_REGION 106 911 116 911 50 HELIX 119 911 125 COLOUR_TEXT_REGION 119 911 125 911 50 HELIX 6 912 20 COLOUR_TEXT_REGION 6 912 20 912 50 HELIX 25 912 35 COLOUR_TEXT_REGION 25 912 35 912 50 HELIX 44 912 66 COLOUR_TEXT_REGION 44 912 66 912 50 HELIX 78 912 95 COLOUR_TEXT_REGION 78 912 95 912 50 HELIX 106 912 117 COLOUR_TEXT_REGION 106 912 117 912 50 HELIX 119 912 126 COLOUR_TEXT_REGION 119 912 126 912 50