SILENT_MODE BLOCK_FILE jp_pCNNuHr.concise.blc MAX_NSEQ 898 MAX_INPUT_LEN 900 OUTPUT_FILE jp_pCNNuHr.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 320 887 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 888 320 897 H SPACE SUB_CHARS 1 888 320 897 E SPACE SUB_CHARS 1 888 320 897 - SPACE STRAND 27 891 31 COLOUR_TEXT_REGION 27 891 31 891 51 STRAND 111 891 112 COLOUR_TEXT_REGION 111 891 112 891 51 STRAND 125 891 129 COLOUR_TEXT_REGION 125 891 129 891 51 STRAND 186 891 188 COLOUR_TEXT_REGION 186 891 188 891 51 STRAND 206 891 207 COLOUR_TEXT_REGION 206 891 207 891 51 STRAND 215 891 220 COLOUR_TEXT_REGION 215 891 220 891 51 STRAND 248 891 251 COLOUR_TEXT_REGION 248 891 251 891 51 STRAND 256 891 258 COLOUR_TEXT_REGION 256 891 258 891 51 STRAND 291 891 303 COLOUR_TEXT_REGION 291 891 303 891 51 STRAND 308 891 311 COLOUR_TEXT_REGION 308 891 311 891 51 STRAND 314 891 319 COLOUR_TEXT_REGION 314 891 319 891 51 HELIX 4 891 20 COLOUR_TEXT_REGION 4 891 20 891 50 HELIX 33 891 45 COLOUR_TEXT_REGION 33 891 45 891 50 HELIX 49 891 57 COLOUR_TEXT_REGION 49 891 57 891 50 HELIX 64 891 70 COLOUR_TEXT_REGION 64 891 70 891 50 HELIX 79 891 89 COLOUR_TEXT_REGION 79 891 89 891 50 HELIX 97 891 103 COLOUR_TEXT_REGION 97 891 103 891 50 HELIX 149 891 160 COLOUR_TEXT_REGION 149 891 160 891 50 HELIX 229 891 243 COLOUR_TEXT_REGION 229 891 243 891 50 HELIX 261 891 268 COLOUR_TEXT_REGION 261 891 268 891 50 STRAND 27 896 31 COLOUR_TEXT_REGION 27 896 31 896 51 STRAND 110 896 113 COLOUR_TEXT_REGION 110 896 113 896 51 STRAND 124 896 131 COLOUR_TEXT_REGION 124 896 131 896 51 STRAND 185 896 189 COLOUR_TEXT_REGION 185 896 189 896 51 STRAND 204 896 208 COLOUR_TEXT_REGION 204 896 208 896 51 STRAND 215 896 221 COLOUR_TEXT_REGION 215 896 221 896 51 STRAND 248 896 252 COLOUR_TEXT_REGION 248 896 252 896 51 STRAND 255 896 258 COLOUR_TEXT_REGION 255 896 258 896 51 STRAND 291 896 292 COLOUR_TEXT_REGION 291 896 292 896 51 STRAND 295 896 303 COLOUR_TEXT_REGION 295 896 303 896 51 STRAND 309 896 312 COLOUR_TEXT_REGION 309 896 312 896 51 STRAND 314 896 319 COLOUR_TEXT_REGION 314 896 319 896 51 HELIX 4 896 20 COLOUR_TEXT_REGION 4 896 20 896 50 HELIX 32 896 45 COLOUR_TEXT_REGION 32 896 45 896 50 HELIX 49 896 57 COLOUR_TEXT_REGION 49 896 57 896 50 HELIX 65 896 71 COLOUR_TEXT_REGION 65 896 71 896 50 HELIX 80 896 89 COLOUR_TEXT_REGION 80 896 89 896 50 HELIX 98 896 105 COLOUR_TEXT_REGION 98 896 105 896 50 HELIX 132 896 132 COLOUR_TEXT_REGION 132 896 132 896 50 HELIX 149 896 159 COLOUR_TEXT_REGION 149 896 159 896 50 HELIX 229 896 243 COLOUR_TEXT_REGION 229 896 243 896 50 HELIX 263 896 268 COLOUR_TEXT_REGION 263 896 268 896 50 HELIX 313 896 313 COLOUR_TEXT_REGION 313 896 313 896 50 STRAND 28 897 31 COLOUR_TEXT_REGION 28 897 31 897 51 STRAND 216 897 219 COLOUR_TEXT_REGION 216 897 219 897 51 STRAND 290 897 304 COLOUR_TEXT_REGION 290 897 304 897 51 STRAND 307 897 311 COLOUR_TEXT_REGION 307 897 311 897 51 STRAND 314 897 319 COLOUR_TEXT_REGION 314 897 319 897 51 HELIX 4 897 20 COLOUR_TEXT_REGION 4 897 20 897 50 HELIX 34 897 45 COLOUR_TEXT_REGION 34 897 45 897 50 HELIX 50 897 58 COLOUR_TEXT_REGION 50 897 58 897 50 HELIX 62 897 69 COLOUR_TEXT_REGION 62 897 69 897 50 HELIX 78 897 88 COLOUR_TEXT_REGION 78 897 88 897 50 HELIX 90 897 101 COLOUR_TEXT_REGION 90 897 101 897 50 HELIX 150 897 168 COLOUR_TEXT_REGION 150 897 168 897 50 HELIX 228 897 232 COLOUR_TEXT_REGION 228 897 232 897 50 HELIX 239 897 251 COLOUR_TEXT_REGION 239 897 251 897 50 HELIX 258 897 268 COLOUR_TEXT_REGION 258 897 268 897 50