QUERY                  : TIRFSVDRPFHIVVRRRGAILFLGSIADPHDPGPA : QUERY 
UniRef90_UPI0003487187 : --EFLVDQPFRFVLRRRGAILFTGRITDPVDPGPA : UniRef90_UPI0003487187
UniRef90_UPI00034A4F07 : -VAFTVDRPFVFALRRRGALLFLGRVSDPVDPGPA : UniRef90_UPI00034A4F07
UniRef90_UPI00034D7FC2 : --KFTVDRPFRFTLRRGAALLFTGHVSDPVDPGPA : UniRef90_UPI00034D7FC2
UniRef90_UPI000369B209 : -VVFTADRPFTVVLRRRSAILFLGVVADPKDPGPA : UniRef90_UPI000369B209
UniRef90_UPI00034AA2E4 : --EFTADRPFAFILRRKGAALFAGGITEPEDPGPA : UniRef90_UPI00034AA2E4
UniRef90_UPI00034D50FA : -LRFTADRPFCFVLRRGPAALFLGRVASPADP--- : UniRef90_UPI00034D50FA
UniRef90_H2M2I6        : ---FKADRPFLFLLRQTGSILFMGRVMNPADQAP- : UniRef90_H2M2I6
UniRef90_UPI00034F3D19 : -VRFTVDRPFLFLVQRTSCLLFMGRITNPA----- : UniRef90_UPI00034F3D19
UniRef90_UPI0004571705 : SLVFKADRPFFFLLRHTGAILFMGRIMDP------ : UniRef90_UPI0004571705

                       : 1---------11--------21--------31--- :
OrigSeq                : TIRFSVDRPFHIVVRRRGAILFLGSIADPHDPGPA : OrigSeq

Jnet                   : -EEEEE---EEEEEE----EEEEEE---------- : Jnet
jhmm                   : -EEEE----EEEEEE----EEEEEE---------- : jhmm
jpssm                  : -EEEEE----EEEEE----EEEEE----------- : jpssm

Lupas 14               : ----------------------------------- : Lupas 14
Lupas 21               : ----------------------------------- : Lupas 21
Lupas 28               : ----------------------------------- : Lupas 28

Jnet_25                : ---B-B--BBBBBB----BBBBBB-B--------- : Jnet_25
Jnet_5                 : ---------B-BBB-----BBB-B-B--------- : Jnet_5
Jnet_0                 : ----------------------------------- : Jnet_0
Jnet Rel               : 82888148611222136611334113577777889 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.