SILENT_MODE
BLOCK_FILE jp_chePYfM.concise.blc
MAX_NSEQ 123
MAX_INPUT_LEN 125
OUTPUT_FILE jp_chePYfM.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 46 112   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 113 46 122 H SPACE
SUB_CHARS 1 113 46 122 E SPACE
SUB_CHARS 1 113 46 122 - SPACE
STRAND 11 116 19
COLOUR_TEXT_REGION 11 116 19 116 51
STRAND 42 116 44
COLOUR_TEXT_REGION 42 116 44 116 51
HELIX 24 116 35
COLOUR_TEXT_REGION 24 116 35 116 50
STRAND 11 121 19
COLOUR_TEXT_REGION 11 121 19 121 51
STRAND 41 121 45
COLOUR_TEXT_REGION 41 121 45 121 51
HELIX 24 121 35
COLOUR_TEXT_REGION 24 121 35 121 50
STRAND 11 122 18
COLOUR_TEXT_REGION 11 122 18 122 51
STRAND 42 122 44
COLOUR_TEXT_REGION 42 122 44 122 51
HELIX 24 122 35
COLOUR_TEXT_REGION 24 122 35 122 50