SILENT_MODE BLOCK_FILE jp_laRWy1h.concise.blc MAX_NSEQ 199 MAX_INPUT_LEN 201 OUTPUT_FILE jp_laRWy1h.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 112 188 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 189 112 198 H SPACE SUB_CHARS 1 189 112 198 E SPACE SUB_CHARS 1 189 112 198 - SPACE STRAND 7 192 9 COLOUR_TEXT_REGION 7 192 9 192 51 STRAND 24 192 29 COLOUR_TEXT_REGION 24 192 29 192 51 STRAND 35 192 45 COLOUR_TEXT_REGION 35 192 45 192 51 STRAND 52 192 58 COLOUR_TEXT_REGION 52 192 58 192 51 STRAND 87 192 97 COLOUR_TEXT_REGION 87 192 97 192 51 STRAND 102 192 107 COLOUR_TEXT_REGION 102 192 107 192 51 HELIX 22 192 23 COLOUR_TEXT_REGION 22 192 23 192 50 HELIX 63 192 81 COLOUR_TEXT_REGION 63 192 81 192 50 HELIX 108 192 110 COLOUR_TEXT_REGION 108 192 110 192 50 STRAND 7 197 9 COLOUR_TEXT_REGION 7 197 9 197 51 STRAND 23 197 29 COLOUR_TEXT_REGION 23 197 29 197 51 STRAND 34 197 45 COLOUR_TEXT_REGION 34 197 45 197 51 STRAND 52 197 58 COLOUR_TEXT_REGION 52 197 58 197 51 STRAND 86 197 97 COLOUR_TEXT_REGION 86 197 97 197 51 STRAND 102 197 106 COLOUR_TEXT_REGION 102 197 106 197 51 HELIX 63 197 80 COLOUR_TEXT_REGION 63 197 80 197 50 HELIX 107 197 110 COLOUR_TEXT_REGION 107 197 110 197 50 STRAND 7 198 8 COLOUR_TEXT_REGION 7 198 8 198 51 STRAND 26 198 28 COLOUR_TEXT_REGION 26 198 28 198 51 STRAND 35 198 45 COLOUR_TEXT_REGION 35 198 45 198 51 STRAND 52 198 57 COLOUR_TEXT_REGION 52 198 57 198 51 STRAND 88 198 97 COLOUR_TEXT_REGION 88 198 97 198 51 STRAND 102 198 108 COLOUR_TEXT_REGION 102 198 108 198 51 HELIX 19 198 25 COLOUR_TEXT_REGION 19 198 25 198 50 HELIX 63 198 81 COLOUR_TEXT_REGION 63 198 81 198 50