SILENT_MODE BLOCK_FILE jp_zNHkRmR.concise.blc MAX_NSEQ 710 MAX_INPUT_LEN 712 OUTPUT_FILE jp_zNHkRmR.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 152 699 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 700 152 709 H SPACE SUB_CHARS 1 700 152 709 E SPACE SUB_CHARS 1 700 152 709 - SPACE STRAND 4 703 4 COLOUR_TEXT_REGION 4 703 4 703 51 STRAND 12 703 18 COLOUR_TEXT_REGION 12 703 18 703 51 STRAND 58 703 62 COLOUR_TEXT_REGION 58 703 62 703 51 STRAND 87 703 93 COLOUR_TEXT_REGION 87 703 93 703 51 STRAND 99 703 103 COLOUR_TEXT_REGION 99 703 103 703 51 STRAND 108 703 110 COLOUR_TEXT_REGION 108 703 110 703 51 STRAND 131 703 136 COLOUR_TEXT_REGION 131 703 136 703 51 HELIX 42 703 54 COLOUR_TEXT_REGION 42 703 54 703 50 HELIX 66 703 79 COLOUR_TEXT_REGION 66 703 79 703 50 HELIX 111 703 117 COLOUR_TEXT_REGION 111 703 117 703 50 HELIX 124 703 125 COLOUR_TEXT_REGION 124 703 125 703 50 STRAND 3 708 4 COLOUR_TEXT_REGION 3 708 4 708 51 STRAND 12 708 20 COLOUR_TEXT_REGION 12 708 20 708 51 STRAND 58 708 62 COLOUR_TEXT_REGION 58 708 62 708 51 STRAND 87 708 94 COLOUR_TEXT_REGION 87 708 94 708 51 STRAND 100 708 104 COLOUR_TEXT_REGION 100 708 104 708 51 STRAND 108 708 110 COLOUR_TEXT_REGION 108 708 110 708 51 STRAND 131 708 136 COLOUR_TEXT_REGION 131 708 136 708 51 HELIX 42 708 54 COLOUR_TEXT_REGION 42 708 54 708 50 HELIX 67 708 79 COLOUR_TEXT_REGION 67 708 79 708 50 HELIX 111 708 116 COLOUR_TEXT_REGION 111 708 116 708 50 STRAND 12 709 18 COLOUR_TEXT_REGION 12 709 18 709 51 STRAND 58 709 63 COLOUR_TEXT_REGION 58 709 63 709 51 STRAND 87 709 92 COLOUR_TEXT_REGION 87 709 92 709 51 STRAND 99 709 102 COLOUR_TEXT_REGION 99 709 102 709 51 STRAND 132 709 136 COLOUR_TEXT_REGION 132 709 136 709 51 HELIX 43 709 54 COLOUR_TEXT_REGION 43 709 54 709 50 HELIX 64 709 78 COLOUR_TEXT_REGION 64 709 78 709 50 HELIX 111 709 117 COLOUR_TEXT_REGION 111 709 117 709 50 HELIX 123 709 127 COLOUR_TEXT_REGION 123 709 127 709 50