SILENT_MODE
BLOCK_FILE jp_PLZDKD6.concise.blc
MAX_NSEQ 545
MAX_INPUT_LEN 547
OUTPUT_FILE jp_PLZDKD6.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 90 534   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 535 90 544 H SPACE
SUB_CHARS 1 535 90 544 E SPACE
SUB_CHARS 1 535 90 544 - SPACE
STRAND 10 538 15
COLOUR_TEXT_REGION 10 538 15 538 51
STRAND 71 538 86
COLOUR_TEXT_REGION 71 538 86 538 51
HELIX 31 538 42
COLOUR_TEXT_REGION 31 538 42 538 50
HELIX 50 538 64
COLOUR_TEXT_REGION 50 538 64 538 50
STRAND 10 543 15
COLOUR_TEXT_REGION 10 543 15 543 51
STRAND 21 543 24
COLOUR_TEXT_REGION 21 543 24 543 51
STRAND 31 543 31
COLOUR_TEXT_REGION 31 543 31 543 51
STRAND 71 543 86
COLOUR_TEXT_REGION 71 543 86 543 51
HELIX 32 543 42
COLOUR_TEXT_REGION 32 543 42 543 50
HELIX 50 543 64
COLOUR_TEXT_REGION 50 543 64 543 50
STRAND 3 544 3
COLOUR_TEXT_REGION 3 544 3 544 51
STRAND 10 544 15
COLOUR_TEXT_REGION 10 544 15 544 51
STRAND 72 544 86
COLOUR_TEXT_REGION 72 544 86 544 51
HELIX 31 544 43
COLOUR_TEXT_REGION 31 544 43 544 50
HELIX 50 544 64
COLOUR_TEXT_REGION 50 544 64 544 50