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This follows the conventions of the NBRF (PIR) programs.

line1:	Title of matrix
line2:	23 characters representing the one-letter codes and defining the order
that the matrix is stored in
lines3 to 25 are format(23I3).

MULTALIGN reads the one_lettercode line and uses this as an index into the matrix that follows.

Examples: md.mat,up.mat,gc.mat. Source: the above example files.