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Example database

I have included a small sequence database for testing purposes. This is in the examples subdirectory and is called ``protein''. If you set GJNDBDIR and GJNDBROOT appropriately you can do a quick scan against this database to see how the program works before investing time setting up the up to date sequence databases. (In fact this database is PIR14 which contains 6,858 sequences - 1988 vintage I think). If I find some disk space I may make the sequences from the latest PIR database available with indexes on our ftp server.


gjb@bioch.ox.ac.uk