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Introduction
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Citing SCANPS
How to use SCANPS to search a protein database
Introduction
Introduction to Unix Pipes and redirection
Simple Scanning - just returns top score for each sequence
Scan with sequence using default parameters and database
Sort the result
Examine the hit list
Extracting the sequences from the database
Generating the local alignments
Generating the local alignments - estimating significance
Advanced Scanning - apply the NALL algorithm to the database
Introduction
Running the NALL scan
Running sortsco to sort the output and get titles
Processing the results of the NALL scan
Further analysis of the NALL output
