# SCANPS Scan: Thu Jul 18 12:55:08 2002 # SCANPS Version: 2.3.9 (Wed Jul 17 14:02:27 BST 2002) # Authors: G. J. Barton, S. M. J. Searle, C. Webber # University of Dundee and EMBL-EBI # Query file: test.fa # Query ID: SCANPS_TEST # Query Title: - Annexin domain test seq for SCANPS # Query Length: 74 # SCANPS MODE: 200 # Matrix file: /homes/geoff/c/scanps/gjscanps/mat//BLOSUM50 # Matrix title: NCBI Matrix - see file for type # LD penalty: 6.00 # Database name: sprot.fas # Created on: Mon Jun 24 22:43:18 2002 # Number of sequences: 110788 # Number of residues/bases in database: 40678337 # Eval Cutoff: 30 # FIT_A: -1.42464e+06 1.4246e+06 -163342 # FIT_B: 0 0.781179 # Eval Cutoff for profile: 0.1 # Number of iterations: 1 # Profile Weight Method: 1 # Pos Weight Factor: 1.500000 # Pid Threshold: 0.970000 # # Intel MMX and SSE instructions supported by chip. #
and contains information about the scan that was done, and which database was searched with which parameters. The output is intended to be easy to parse with a perl script. Lines starting with a # are comments, values follow a colon on the line, and are identified by a string between the # and the colon, or when there are multiple values on a line, between the last value and a colon.