# LaTeX2HTML 95.1 (Fri Jan 20 1995)
# Associate image original text (scrambled) with physical files.

$key = q/{_inline}$geq0.5${_inline}/;
$cached_env_img{$key} ='<IMG  ALIGN=MIDDLE ALT="" SRC="img67.gif">'; 
$key = q/{_inline}$2.0${_inline}/;
$cached_env_img{$key} ='<IMG  ALIGN=BOTTOM ALT="" SRC="img18.gif">'; 
$key = q/{_inline}$P_ij^prime;SPM_gt;6.0${_inline}/;
$cached_env_img{$key} ='<IMG  ALIGN=MIDDLE ALT="" SRC="img25.gif">'; 
$key = q/{_inline}$4.0${_inline}/;
$cached_env_img{$key} ='<IMG  ALIGN=BOTTOM ALT="" SRC="img24.gif">'; 
$key = q/{_inline}$6.0${_inline}/;
$cached_env_img{$key} ='<IMG  ALIGN=BOTTOM ALT="" SRC="img22.gif">'; 
$key = q/{_inline}$2.5${_inline}/;
$cached_env_img{$key} ='<IMG  ALIGN=BOTTOM ALT="" SRC="img16.gif">'; 
$key = q/{displaymath}S_c=left(fracS_pL_aright)left(fracL_a-i_aL_aright){displaymath}/;
$cached_env_img{$key} ='<IMG  ALIGN=BOTTOM ALT="" SRC="img41.gif">'; 
$key = q/{displaymath}S_c=left(fracS_pL_pright)left(fracL_p-i_bL_bright){displaymath}/;
$cached_env_img{$key} ='<IMG  ALIGN=BOTTOM ALT="" SRC="img38.gif">'; 
$key = q/{}specialhoffset=30voffset=240hscale=50vscale=50angle=270psfile=..examplesglobinglobin_align_als.ps{}/;
$cached_env_img{$key} ='<IMG  ALIGN=BOTTOM ALT="" SRC="img70.gif">'; 
$key = q/{}specialhoffset=210voffset=-40hscale=40vscale=40angle=0psfile=..examplesglobin2hhba.ps{}/;
$cached_env_img{$key} ='<IMG  ALIGN=BOTTOM ALT="" SRC="img72.gif">'; 
$key = q/{tabular}|ll|hlineSTAMP;SPM_amp;Mainprogram,doesPAIRWISE,tree;SPM_amp;construction,TREEWISEandSCANmodes.hlineALIGNFIT;SPM_amp;Givenalistofdomainsandamultiplesequence;SPM_amp;alignmentoutputsaninitialtransformation.hlinePDBC;SPM_amp;FindsandreportsinformationaboutPDBfiles;SPM_amp;givenafour(PDB)codeandorchainidentifier.hlineTRANSFORM;SPM_amp;Givenalistoftransformations,outputsthe;SPM_amp;correspondingsetofcoordinates.hlineSORTTRANS;SPM_amp;SortstheoutputfromSCAN,andremovesrepeated;SPM_amp;transformations.hlinePDBSEQ;SPM_amp;Givenalistofdomains,extractsthecorresponding;SPM_amp;sequencesfromthePDBfiles.hlineVER2HOR;SPM_amp;GivenaSTAMPalignmentfile,outputsaneasytoread;SPM_amp;textversionofthealignmentforquickanalysis.hlineDSTAMP;SPM_amp;GivenaSTAMPalignmentfile,outputscommandsfor;SPM_amp;GJB'sprogramALSCRIPT(alignmenttoPostscript).hlineGSTAMP;SPM_amp;GivenaSTAMPalignmentfile,outputscommandsfor;SPM_amp;PerKraulis'MOLSCRIPTprogram.hlineAVESTRUC;SPM_amp;GivenaSTAMPalignmentfile,generatesanaverage;SPM_amp;setofmainchainorCalphacoordinatesforthe;SPM_amp;structuralfamily.hlinePOSTSTAMP;SPM_amp;ReanalysesaSTAMPalignmentfile(providesamore;SPM_amp;accuratesetofequivalencesforalignmentsofmore;SPM_amp;thanonestructure).hlinePICKFRAME;SPM_amp;Givenatransformation,transformsallotherdomains;SPM_amp;ontoanother(specifiedbytheuser).hlineCLUS2BLC;SPM_amp;TakesasequencealignmentinCLUSTALformatand;SPM_amp;convertsittoAMPSformatforuseduring;SPM_amp;theprogramALIGNFIT.hlineMSF2BLC;SPM_amp;TakesasequencealignmentinMSFformatand;SPM_amp;convertsittoAMPSformatforuseduring;SPM_amp;theprogramALIGNFIT.hline{tabular}/;
$cached_env_img{$key} ='<IMG  ALIGN=BOTTOM ALT="" SRC="img43.gif">'; 
$key = q/{_inline}$5.5${_inline}/;
$cached_env_img{$key} ='<IMG  ALIGN=BOTTOM ALT="" SRC="img14.gif">'; 
$key = q/{_inline}$5.6${_inline}/;
$cached_env_img{$key} ='<IMG  ALIGN=BOTTOM ALT="" SRC="img50.gif">'; 
$key = q/{_inline}$beta${_inline}/;
$cached_env_img{$key} ='<IMG  ALIGN=MIDDLE ALT="" SRC="img10.gif">'; 
$key = q/{_inline}$C_beta${_inline}/;
$cached_env_img{$key} ='<IMG  ALIGN=MIDDLE ALT="" SRC="img61.gif">'; 
$key = q/{_inline}$9.8${_inline}/;
$cached_env_img{$key} ='<IMG  ALIGN=BOTTOM ALT="" SRC="img15.gif">'; 
$key = q/{_inline}$Ntimes(N-1)2${_inline}/;
$cached_env_img{$key} ='<IMG  ALIGN=MIDDLE ALT="" SRC="img87.gif">'; 
$key = q/{_inline}$P_ijprime${_inline}/;
$cached_env_img{$key} ='<IMG  ALIGN=MIDDLE ALT="" SRC="img92.gif">'; 
$key = q/{displaymath}D_sec=sqrt(|Q_h-D_h|^2+|Q_b-D_b|^2){displaymath}/;
$cached_env_img{$key} ='<IMG  ALIGN=BOTTOM ALT="" SRC="img96.gif">'; 
$key = q/{_inline}$P_ij${_inline}/;
$cached_env_img{$key} ='<IMG  ALIGN=MIDDLE ALT="" SRC="img69.gif">'; 
$key = q/{_inline}$100timesabs|S_c-S_c,old|S_c,oldleq${_inline}/;
$cached_env_img{$key} ='<IMG  ALIGN=MIDDLE ALT="" SRC="img93.gif">'; 
$key = q/{_inline}$D_b${_inline}/;
$cached_env_img{$key} ='<IMG  ALIGN=MIDDLE ALT="" SRC="img100.gif">'; 
$key = q/{}specialhoffset=0voffset=-40hscale=40vscale=40angle=0psfile=..examplesglobin1lh1.ps{}/;
$cached_env_img{$key} ='<IMG  ALIGN=BOTTOM ALT="" SRC="img71.gif">'; 
$key = q/{_inline}$s_ij${_inline}/;
$cached_env_img{$key} ='<IMG  ALIGN=MIDDLE ALT="" SRC="img5.gif">'; 
$key = q/{displaymath}S_c=left(fracS_pL_pright)left(fracL_p-i_aL_aright)left(fracL_p-i_bL_bright){displaymath}/;
$cached_env_img{$key} ='<IMG  ALIGN=BOTTOM ALT="" SRC="img31.gif">'; 
$key = q/{_inline}$S_c;SPM_lt;2.0${_inline}/;
$cached_env_img{$key} ='<IMG  ALIGN=MIDDLE ALT="" SRC="img27.gif">'; 
$key = q/{_inline}$;SPM_gt;50%${_inline}/;
$cached_env_img{$key} ='<IMG  ALIGN=MIDDLE ALT="" SRC="img23.gif">'; 
$key = q/{_inline}$D_h${_inline}/;
$cached_env_img{$key} ='<IMG  ALIGN=MIDDLE ALT="" SRC="img99.gif">'; 
$key = q/{tabular}llRobertB.Russell(RBR);SPM_amp;GeoffreyJ.Barton(GJB)BiomolecularModellingLaboratory;SPM_amp;LaboratoryofMolecularBiophysicsImperialCancerResearchFund;SPM_amp;TheRexRichardsBuildingLincoln'sInnFields,P.O.Box123;SPM_amp;SouthParksRoadLondon,WC2A3PX,U.K.;SPM_amp;Oxford,OX13PG,U.K.Tel:+441712693583;SPM_amp;Tel:+44865275368FAX:+441712693417;SPM_amp;FAX:44865510454e-mail:russell@icrf.icnet.uk;SPM_amp;e-mailgjb@bioch.ox.ac.ukWWW:http:bonsai.lif.icnet.uk;SPM_amp;WWW:http:geoff.biop.ox.ac.uk{tabular}/;
$cached_env_img{$key} ='<IMG  ALIGN=BOTTOM ALT="" SRC="img1.gif">'; 
$key = q/{_inline}$L_a${_inline}/;
$cached_env_img{$key} ='<IMG  ALIGN=MIDDLE ALT="" SRC="img33.gif">'; 
$key = q/{_inline}$L_b${_inline}/;
$cached_env_img{$key} ='<IMG  ALIGN=MIDDLE ALT="" SRC="img34.gif">'; 
$key = q/{_inline}$P_ij^primegeq6${_inline}/;
$cached_env_img{$key} ='<IMG  ALIGN=MIDDLE ALT="" SRC="img88.gif">'; 
$key = q/{_inline}$Q_b${_inline}/;
$cached_env_img{$key} ='<IMG  ALIGN=MIDDLE ALT="" SRC="img98.gif">'; 
$key = q/{_inline}$P_ijprime;SPM_gt;6.0${_inline}/;
$cached_env_img{$key} ='<IMG  ALIGN=MIDDLE ALT="" SRC="img102.gif">'; 
$key = q/{displaymath}S_c=left(fracS_pL_pright)left(fracL_p-i_aL_aright){displaymath}/;
$cached_env_img{$key} ='<IMG  ALIGN=BOTTOM ALT="" SRC="img36.gif">'; 
$key = q/{displaymath}P_ij=expfracd_ij^2-2timesE_1^2expfracs_ij^2-2timesE_2^2{displaymath}/;
$cached_env_img{$key} ='<IMG  ALIGN=BOTTOM ALT="" SRC="img2.gif">'; 
$key = q/{_inline}$S_c${_inline}/;
$cached_env_img{$key} ='<IMG  ALIGN=MIDDLE ALT="" SRC="img52.gif">'; 
$key = q/{_inline}$leq1.5${_inline}/;
$cached_env_img{$key} ='<IMG  ALIGN=MIDDLE ALT="" SRC="img56.gif">'; 
$key = q/{_inline}$d_ij${_inline}/;
$cached_env_img{$key} ='<IMG  ALIGN=MIDDLE ALT="" SRC="img3.gif">'; 
$key = q/{_inline}$Q_h${_inline}/;
$cached_env_img{$key} ='<IMG  ALIGN=MIDDLE ALT="" SRC="img97.gif">'; 
$key = q/{_inline}$L_p${_inline}/;
$cached_env_img{$key} ='<IMG  ALIGN=MIDDLE ALT="" SRC="img35.gif">'; 
$key = q/{_inline}$10times92)=45${_inline}/;
$cached_env_img{$key} ='<IMG  ALIGN=MIDDLE ALT="" SRC="img65.gif">'; 
$key = q/{_inline}$P_ij^prime${_inline}/;
$cached_env_img{$key} ='<IMG  ALIGN=MIDDLE ALT="" SRC="img12.gif">'; 
$key = q/{_inline}$P_ijgeq${_inline}/;
$cached_env_img{$key} ='<IMG  ALIGN=MIDDLE ALT="" SRC="img86.gif">'; 
$key = q/{_inline}$geq40${_inline}/;
$cached_env_img{$key} ='<IMG  ALIGN=MIDDLE ALT="" SRC="img57.gif">'; 
$key = q/{displaymath}S_c=left(fracS_pL_pright){displaymath}/;
$cached_env_img{$key} ='<IMG  ALIGN=BOTTOM ALT="" SRC="img40.gif">'; 
$key = q/{displaymath}S_c=left(fracS_pL_pright)left(fracL_p-i_aL_pright)left(fracL_p-i_bL_pright){displaymath}/;
$cached_env_img{$key} ='<IMG  ALIGN=BOTTOM ALT="" SRC="img32.gif">'; 
$key = q/{_inline}$S_cgeq2.5${_inline}/;
$cached_env_img{$key} ='<IMG  ALIGN=MIDDLE ALT="" SRC="img54.gif">'; 
$key = q/{_inline}$rightarrow${_inline}/;
$cached_env_img{$key} ='<IMG  ALIGN=BOTTOM ALT="" SRC="img82.gif">'; 

1;

