This program takes the output from a scan, and cleans and sorts the
output. It removes repeated transformations by a simple least
squares comparison of the matrices and vectors for those
transformations which have the same identifier.
The format is:
sorttrans -f <scan output file> -s <keyword> <cutoff> [-t -i]
-f reads output from STAMP scanning, -s tells the program how to
sort the output. The keyword tells which method to use. There
are 8 possible keywords:
Sc sort by Sc rms RMS deviaition nfit number of fitted atoms len alignment length frac nfit/len q_frac nfit/q_len (q_len = length of query structure) d_frac nfit/d_len (d_len = length of database structure) n_sec number of equivalent secondary structure elements seq_id percent sequence identity sec_id percent secondary structure identity
sorted transformations are written to the standard output.
The option -t ==> ignore identifiers. This means that domains will be
ignored if they have similar transformations and the same filename (i.e.
assumes that if the same transformation is applied to the same
file, we are dealing with the same superimposition).