Sometimes one has several files containing transformations or alignemnts or both
and wants to combine them. Alignments/transformations from STAMP may need to be
combined with (for example) an alignment of a single PDB sequence with it's homologues
from a sequence database search, etc. MERGESTAMP does just this. It is essentially
an extension of MERGETRANS.
The format is:
mergestamp -f1 <transformation file1> -f2 <transformation file2> [-i <domain identifier>]
If an identifier is given, then that identifier will be used to link the two files (provided it can be found in both). Otherwise the program will simply search for the first identifier that is exactly in common across the two transformation/alignment files.