#!/bin/sh

arg1=$1

rm $arg1/$arg1.blast
rm $arg1/$arg1.align
rm $arg1/$arg1.blast.gz
rm $arg1/$arg1.hmm
rm $arg1/$arg1.profile
rm $arg1/$arg1.pssm
#rm $arg1/$arg1.fasta
#rm $arg1/$arg1.jnet

rm TempPatternFile_$arg1*
rm CurrentBatchmanInstructionsFile$arg1*

rm submitBatchman.e*
rm submitBatchman.o*

rm submitToJpred.e*
rm submitToJpred.o*

rm PatternFile_$arg1.txt
rm $arg1/PatternFile_$arg1_net4000run1_predictions.res
