[Jalview-discuss] new feature idea

[Olivier Martin]

Hello all,

I recently had to modify Jalview 2.4 to add a feature that may be useful 
for a wider audience.
Basically, the idea is to modify the view of the multiple alignment in 
such a way that only the residues that are not matching the consensus 
are displayed (to emphasize non conserved regions in a highly conserved 
alignment). Other residues can be replaced by any relevant/neutral 
character. Users can switch from one view to the other by selecting a 
menu entry. I've got some code I can share if you're interested.

Olivier

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Olivier Martin
M.Sc. in Biology
M.Sc. in Bioinformatics
Swiss Institute of Bioinformatics
Vital-IT Group
Quartier Sorge - Batiment Genopode
CH-1015 Lausanne - Dorigny
Switzerland
Tel.: +41 21 692 4056
Fax: +41 21 692 4065