[Jalview-discuss] proper way to add a new color scheme

Jim Procter jprocter at compbio.dundee.ac.uk
Wed Dec 9 11:06:22 GMT 2009

Dear Huseyin.

On 09/12/2009 08:04, Huseyin Kaya wrote:
> Hi everyone,
> I was in need for a color scheme that is very similar to "Percentage
> Identity".
> But it should only paint the backgrounds of bases different than
> consensus with the color pink.
> It is very simple in the sense that it doesn't require threshold values.
> I couldn't find a way to do this from menus including "User defined"
> color scheme menu.
Jalview doesn't allow you to modify the consensus colourscheme at the 
moment. However, we have had a few requests regarding more configuration 
options for these colourschemes - I'll add your name to the list of 
testers, if you'd like!.


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