[Jalview-discuss] Jalview installation SOS!

[Andrew Perry]

2010/1/28 朱浩 <zhuhao at smu.edu.cn>

> Under Linux, I meet a problem when installing jalview.  The whole story is
> as follows, and I do not know what is "InvocationTargetException":
>
> [zhu at localhost ~]$ sh ./install.bin
> Preparing to install...
> Extracting the JRE from the installer archive...
> Unpacking the JRE...
> Extracting the installation resources from the installer archive...
> Configuring the installer for this system's environment...
>
> Launching installer...
>
>
> Graphical installers are not supported by the VM. The console mode will be
> used instead...
>
> Invocation of this Java Application has caused an
> InvocationTargetException. This application will now exit. (LAX)
>
> Stack Trace:
> java.lang.UnsatisfiedLinkError:
> /tmp/install.dir.13040/Linux/resource/jre/lib/i386/xawt/libmawt.so:
> libXext.so.6: cannot open shared object file: No such file or directory
>        at java.lang.ClassLoader$NativeLibrary.load(Native Method)
>        at java.lang.ClassLoader.loadLibrary0(Unknown Source)
>        at java.lang.ClassLoader.loadLibrary(Unknown Source)
>        at java.lang.Runtime.load0(Unknown Source)
>        at java.lang.System.load(Unknown Source)
>        at java.lang.ClassLoader$NativeLibrary.load(Native Method)
>        at java.lang.ClassLoader.loadLibrary0(Unknown Source)
>        at java.lang.ClassLoader.loadLibrary(Unknown Source)
>        at java.lang.Runtime.loadLibrary0(Unknown Source)
>        at java.lang.System.loadLibrary(Unknown Source)
>        at sun.security.action.LoadLibraryAction.run(Unknown Source)
>        at java.security.AccessController.doPrivileged(Native Method)
>        at sun.awt.NativeLibLoader.loadLibraries(Unknown Source)
>        at sun.awt.DebugHelper.<clinit>(Unknown Source)
>        at java.awt.Component.<clinit>(Unknown Source)
>        at
> com.zerog.ia.installer.util.BidiUtilImpl.setDefaultLocale(DashoA10*..)
>        at ZeroGbd.a(DashoA10*..)
>        at com.zerog.ia.installer.LifeCycleManager.s(DashoA10*..)
>        at com.zerog.ia.installer.LifeCycleManager.b(DashoA10*..)
>        at com.zerog.ia.installer.LifeCycleManager.a(DashoA10*..)
>        at com.zerog.ia.installer.Main.main(DashoA10*..)
>        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>        at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
>        at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
>        at java.lang.reflect.Method.invoke(Unknown Source)
>        at com.zerog.lax.LAX.launch(DashoA10*..)
>        at com.zerog.lax.LAX.main(DashoA10*..)
> This Application has Unexpectedly Quit: Invocation of this Java Application
> has caused an InvocationTargetException. This application will now exit.
> (LAX)
>
> ________________________________________
>
>
Could you clarify which version of Linux you are using (Ubuntu 9.10 ? Fedora
x.x ?). Are you running under the graphical X11 (Xorg) interface ?

You should try downloading the version "without Java VM" (eg 13.3 Mb, not
69.8 Mb) from http://www.jalview.org/Web_Installers/install.htm and
installing that instead.

Also, make sure that you have Java installed.

(eg, on Debian/Ubuntu run:
$ sudo apt-get install sun-java6-jre
... and possibly:
$ sudo update-alternatives --config java
[to select the default version of Java your system will use]  )

Andrew Perry
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