[Jalview-discuss] Pretty phylogenetic dendrogram from jalview

[Lauren Lui]

Hi Hari,

In the window where the tree is drawn in Jalview, go to File > output to
textbox. This will give you the tree in Newick format.  From just a google
search of "phylogenetic tree drawers" I found this:

http://iubio.bio.indiana.edu/treeapp/treeprint-form.html
http://www.phylodiversity.net/rree/drawtree/index.html

You can input the Newick format and the programs will draw the tree for you.

Here is also a very long list of tree editors:

http://bioinfo.unice.fr/biodiv/Tree_editors.html

Hope that helps!

Lauren


On Thu, May 13, 2010 at 12:02 PM, hari jayaram <harijay at gmail.com> wrote:

> Hi ,
> I wanted to make a dendrogram (like the one here:
> http://en.wikipedia.org/wiki/Phylogenetic_tree ). For an alignment and
> tree calculated inside Jalview/clustalw
> I am interested in something that creates a publication manipulatable
> format like Adobe Illustrator or EPS.
>
> Does anyone have any ideas . Also I am curious how to get the tree
> output from Jalview into that recommended program.
>
> Thanks in advance
> Hari
> _______________________________________________
> Jalview-discuss mailing list
> Jalview-discuss at jalview.org
> http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-discuss
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: http://www.compbio.dundee.ac.uk/pipermail/jalview-discuss/attachments/20100513/87325c1a/attachment.html