[Jalview-discuss] Saving Motif Patterns?

[Jim Procter]

Hi Mike

On 20/10/2010 01:02, Dobbs, Mike wrote:
> Hello,
> I'm new to Jalview and this mail list.
> I'm wondering if it is possible to enter a list of regular expressions 
> for motifs I'm interested in and have them saved. This way I can then 
> re-apply the list to my next multiple alignment without needing to 
> manually enter the expressions one by one. I have about 10 I need to 
> look for all the time.
Oops - I got hit by a rather bizarre 'feature' of thunderbird then - the 
text of your email got inserted into a reply email assigned to the 
thread started by Eric (more coffee needed by me I think!). For 
convenience, I've repeated the reply below:

Jalview doesn't do this at the moment, but it's a useful
useful feature request - so I've added it to the list
(http://issues.jalview.org/browse/JAL-684).

Jim.

ps. Just as an aside - are you annotating regions of the same sequences in different alignments ? If that is the case, then after annotating them all for one alignment using the Find/Create features button, simply export the annotation as a 'features file', and then drag it on to the next alignment to mark up the same regions again.


-- 
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J. B. Procter  (JALVIEW/ENFIN)  Barton Bioinformatics Research Group
Phone/Fax:+44(0)1382 388734/345764  http://www.compbio.dundee.ac.uk
The University of Dundee is a Scottish Registered Charity, No. SC015096.

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