[Jalview-discuss] groovy scripting on jalview startup
foreveremain at gmail.com
Wed Aug 3 10:23:34 BST 2011
Hey David .. thanks for the email.
On 03/08/2011 00:09, David M. Goodstein wrote:
> I was wondering if anyone had developed a template for a groovy
> start-up script that, after initial loading of an sequence set, can
> fire off one of the web services (e.g., Muscle).
nope :( but that is mostly because there are not many people working
with groovy in Jalview as yet.
Looking at the code, this probably isn't immediately straightforward to
do, since the web service clients in jalview desktop are designed to be
run on an already displayed alignment. That being said, I do have an
interactive testing script that loads a file into a new alignment window
which could be adapted to launch a web service job and close the window
once the job has completed.
Since the adaptation of the script might be made easier if I modify some
of Jalview's java code, I've opened a bug to collect all the git commits
What timescale were you thinking of for being about to do this ?
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