[Jalview-discuss] Conventions for Graphical representation for protein annotations
ljgarcia at ebi.ac.uk
Mon Feb 28 13:13:26 GMT 2011
I need to know if there is a key of colours and shapes for the graphical
representation of annotations in proteins. for instance, if I need to
have a pictorial representation of a "domain" or "transcript" then is
there a standardized way to do it? So far I have seen that domains are
usually represented as ellipses or rectangles, and metal bindings as
non-filled circles, while active sites are red-filled circles.
I am particular interested in the next type of annotations:
Domain, Signal, Transit, Propeptide, Peptide, Topological domain,
Intramembrane, Transmenbrane for ranges of sequences, and Metal binding,
Active site, Modified residue, Lipidation, Glycosilation for point
I appreciate any information on this matter.
EMBL-EBI, Cambridge, UK
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