[Jalview-discuss] trouble with Jmol
jprocter at compbio.dundee.ac.uk
Fri Jun 3 01:35:25 BST 2011
Hello Steven, sorry to hear you are having problems.
On 03/06/2011 07:54, Steven Adamson wrote:
> I'm a new Jalview user. The program worked in its entirety at first,
> but Jmol has ceased working. A red line of text in the Jmol window reads:
> java.io.FileNotFoundException: C\Program
> Files\DOCUME~1serLOCALS~1Tempjalview_pdb64970.txt (The system cannotb
> find the file specified)
To work out what's wrong, I need a little more information. When do you
observe this message ? Is it when the program first loads, and opens
it's example alignment - or when you load in your own jalview project ?
Also, could you let me know what machine and java version you have, and
send me any output on the Jalview console when this error occurs ? To
do this, first make sure that the Jalview Java console is enabled in the
'Tools' menu of the Jalview desktop window. Then - close and restart
Jalview, and once the error has occured in Jmol's window, copy and paste
the contents of the text window into a file and send it to me as an
I'm currently on holiday - but if you send me the console log, then I'll
try and take a quick look to see if there's a simple workaround for your
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