[Jalview-discuss] tree model

Jim Procter jprocter at compbio.dundee.ac.uk
Fri Jun 24 08:49:55 BST 2011


Hello Jeff.

On 14/06/2011 16:52, Chen, Xianfeng (CDC/OID/NCIRD) (CTR) wrote:
> I want to know what substitution model is used in Jalview phylogenetic 
> tree? Kimura 2 or JC69?
Jalview includes two empirical substitution models - BLOSUM62 and 
Percent Identity. The latter was discussed in detail in a recent thread: 
http://www.compbio.dundee.ac.uk/pipermail/jalview-discuss/2011-May/000607.html

Jim.

-------------- next part --------------
An HTML attachment was scrubbed...
URL: http://www.compbio.dundee.ac.uk/pipermail/jalview-discuss/attachments/20110624/61207b7d/attachment.html 


More information about the Jalview-discuss mailing list