[Jalview-discuss] tree model

Jim Procter jprocter at compbio.dundee.ac.uk
Fri Jun 24 08:49:55 BST 2011

Hello Jeff.

On 14/06/2011 16:52, Chen, Xianfeng (CDC/OID/NCIRD) (CTR) wrote:
> I want to know what substitution model is used in Jalview phylogenetic 
> tree? Kimura 2 or JC69?
Jalview includes two empirical substitution models - BLOSUM62 and 
Percent Identity. The latter was discussed in detail in a recent thread: 


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