[Jalview-discuss] tree model

[Jim Procter]

Hello Jeff.

On 14/06/2011 16:52, Chen, Xianfeng (CDC/OID/NCIRD) (CTR) wrote:
> I want to know what substitution model is used in Jalview phylogenetic 
> tree? Kimura 2 or JC69?
Jalview includes two empirical substitution models - BLOSUM62 and 
Percent Identity. The latter was discussed in detail in a recent thread: 
http://www.compbio.dundee.ac.uk/pipermail/jalview-discuss/2011-May/000607.html

Jim.

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