[Jalview-discuss] residue numbering changes

Jim Procter jprocter at compbio.dundee.ac.uk
Fri Jun 24 16:59:22 BST 2011


On 22/07/28164 20:59, Vladimir Yarov-Yarovoy wrote:
> Sure - please see the attached example.  The first .msf file contains 
> the original full sequences and correct numbering and the second .msf 
> file was created by Jalview after I deleted certain N- and C-terminal 
> regions and only saved the middle region of the alignment.  Note that 
> all the sequences start from 1 in the second .msf file, although they 
> should start from numbers shown in the third (.png) file.
Thanks very much for this. You have indeed uncovered a tiny, but 
particularly ancient bug, which is now fixed!

The fix is available in the development version of jalview (bug 
JAL-847), and will also be included in the version 2.7 release.

Jim.



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