[Jalview-discuss] Fwd: Jalview applet issue

[David Martin]

Hi Jeanre,

I've copied your mail and my reply to the jalview-discuss mailing list
as then the others (who are probably more competent than me to answer
your queries) will see it.

As far as I can tell there isn't a way to explicitly load a structure
into Jalview from the command line or an applet parameter. Your
immediate best options might be to try a groovy script that would call
the relevant menu options. 

This is not particularly well documented yet. 

..d


-- 
David Martin PhD
College of Life Sciences
University of Dundee 
01382 388704
The University of Dundee is a Scottish Registered Charity, No.
SC015096.





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>>> On 18/03/2011 at 09:31, in message
<AANLkTikfq0iCWapf5i-m3dK8dT5Zcfw_TKsiW_t0SnjG at mail.gmail.com>, Jeanré
Smit<jeanre.smit at gmail.com> wrote:
> Hello this is Jeanre from the University of Pretoria. We are now
> implementing Jalview to view sequences and associate PDB files with
> those sequences. I was wondering if there was a way to pass a STRING
> of a PDB file, instead of that file's filename, to the applet
version
> of Jalview. As far as I could tell there isn't. If there isn't, is
> there a way for me to add such functionality to the jalview.jar that
> I'm currently using? (It would probably have to be rebuilt.)
> 
> Thank you in advance.

The University of Dundee is a registered Scottish charity, No: SC015096